| Chain sequence(s) |
A: SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEE
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | SC5A |
| Energy difference between WT (input) and mutated protein (by FoldX) | -0.150156 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] FoldX: Building mutant model (00:00:17)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:17)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:32)
[INFO] Main: Simulation completed successfully. (00:00:33)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 5 | C | A | -0.5651 | mutated: SC5A |
| 6 | A | A | -0.7087 | |
| 7 | V | A | 0.0000 | |
| 8 | K | A | -1.3527 | |
| 9 | A | A | 0.0000 | |
| 10 | L | A | -0.8311 | |
| 11 | F | A | -0.6863 | |
| 12 | D | A | -2.2509 | |
| 13 | Y | A | 0.0000 | |
| 14 | K | A | -2.5614 | |
| 15 | A | A | -2.4630 | |
| 16 | Q | A | -3.0746 | |
| 17 | R | A | -3.7769 | |
| 18 | E | A | -3.3481 | |
| 19 | D | A | -2.7245 | |
| 20 | E | A | 0.0000 | |
| 21 | L | A | 0.0000 | |
| 22 | T | A | -1.2412 | |
| 23 | F | A | 0.0000 | |
| 24 | T | A | -1.5380 | |
| 25 | K | A | -1.7846 | |
| 26 | S | A | -0.9857 | |
| 27 | A | A | 0.0000 | |
| 28 | I | A | 0.8214 | |
| 29 | I | A | 0.0000 | |
| 30 | Q | A | -1.0943 | |
| 31 | N | A | -1.9763 | |
| 32 | V | A | -1.8409 | |
| 33 | E | A | -2.8038 | |
| 34 | K | A | -3.1333 | |
| 35 | Q | A | -2.5808 | |
| 36 | D | A | -2.5437 | |
| 37 | G | A | -1.6654 | |
| 38 | G | A | -1.3253 | |
| 39 | W | A | -0.9770 | |
| 40 | W | A | -1.5733 | |
| 41 | R | A | -1.8160 | |
| 42 | G | A | 0.0000 | |
| 43 | D | A | -1.6597 | |
| 44 | Y | A | -0.6692 | |
| 45 | G | A | -0.8153 | |
| 46 | G | A | -1.3497 | |
| 47 | K | A | -1.8861 | |
| 48 | K | A | -2.6198 | |
| 49 | Q | A | -1.9143 | |
| 50 | L | A | -1.2235 | |
| 51 | W | A | -0.8754 | |
| 52 | F | A | 0.0000 | |
| 53 | P | A | 0.0000 | |
| 54 | S | A | -1.2957 | |
| 55 | N | A | -1.2402 | |
| 56 | Y | A | -0.8760 | |
| 57 | V | A | 0.0000 | |
| 58 | E | A | -2.8632 | |
| 59 | E | A | -2.6023 |