Project name: query_structure

Status: done

Started: 2026-03-16 20:32:02
Settings
Chain sequence(s) A: LPAPKNLVVSRVTEDSARLSWDIDEQRDWFDSFLIQYQESEKVGEAIVLTVPGSERSYDLTGLKPGTEYTVSIYGVYHVYRSNPLSAIFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:23)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:23)
Show buried residues

Minimal score value
-4.2294
Maximal score value
1.8646
Average score
-0.8923
Total score value
-81.2035

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 0.3929
2 P A -0.9284
3 A A -1.3075
4 P A 0.0000
5 K A -2.3869
6 N A -2.0012
7 L A -0.5790
8 V A 0.5146
9 V A 0.3981
10 S A -0.7483
11 R A -2.0194
12 V A -1.0403
13 T A -1.7976
14 E A -3.0439
15 D A -2.7264
16 S A -2.1035
17 A A 0.0000
18 R A -1.2973
19 L A 0.0000
20 S A -0.7015
21 W A 0.0000
22 D A -2.6180
23 I A -3.0639
24 D A -3.9485
25 E A -4.2294
26 Q A -3.5715
27 R A -3.8049
28 D A -3.2655
29 W A -1.6019
30 F A 0.0000
31 D A -1.9450
32 S A -1.4126
33 F A 0.0000
34 L A 0.3879
35 I A 0.0000
36 Q A 0.5388
37 Y A 0.4136
38 Q A -0.8029
39 E A -1.8264
40 S A -1.4442
41 E A -2.6744
42 K A -2.3722
43 V A -0.1574
44 G A -1.2563
45 E A -1.6141
46 A A -0.3481
47 I A 0.8212
48 V A 1.8646
49 L A 1.3109
50 T A 0.4783
51 V A 0.0000
52 P A -0.9880
53 G A 0.0000
54 S A -1.2708
55 E A -1.2131
56 R A -0.9882
57 S A -0.7170
58 Y A -0.6234
59 D A -1.7318
60 L A 0.0000
61 T A -1.3781
62 G A -1.5017
63 L A 0.0000
64 K A -2.9816
65 P A -2.5254
66 G A -1.8015
67 T A -2.3121
68 E A -1.7891
69 Y A 0.0000
70 T A 0.0816
71 V A 0.0000
72 S A 0.0000
73 I A 0.0000
74 Y A 0.0000
75 G A 0.0000
76 V A -0.3079
77 Y A -0.1983
78 H A -0.2173
79 V A 1.4503
80 Y A 1.2726
81 R A -0.9435
82 S A 0.0000
83 N A -1.5859
84 P A -1.1167
85 L A -0.6278
86 S A 0.0348
87 A A 1.0862
88 I A 1.7996
89 F A 0.0000
90 T A -0.7243
91 T A -1.8676
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Laboratory of Theory of Biopolymers 2018