| Chain sequence(s) |
A: RYNYSSECEQLVNEQINHELNASYFYTALGTYYSQPTVALPGVANYFLAQSNEERRHAHALIQYQNGRGGKVQFSAIQAPPDFSKVLTGGEAATVTTRGFELAIETERMVYDKIRYIYQVAESQRDFALTGFLQKLIDEQVESLRELQELYTKSKRMVNEYWFDQ
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:16)
[INFO] Main: Simulation completed successfully. (00:04:17)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | R | A | -1.9579 | |
| 2 | Y | A | -0.3293 | |
| 3 | N | A | -1.3347 | |
| 4 | Y | A | 0.0000 | |
| 5 | S | A | -1.4856 | |
| 6 | S | A | -1.7503 | |
| 7 | E | A | -2.3405 | |
| 8 | C | A | 0.0000 | |
| 9 | E | A | -2.1916 | |
| 10 | Q | A | -2.5655 | |
| 11 | L | A | 0.0000 | |
| 12 | V | A | 0.0000 | |
| 13 | N | A | 0.0000 | |
| 14 | E | A | -1.3795 | |
| 15 | Q | A | 0.0000 | |
| 16 | I | A | 0.0000 | |
| 17 | N | A | 0.0000 | |
| 18 | H | A | -0.5026 | |
| 19 | E | A | 0.0000 | |
| 20 | L | A | -0.2123 | |
| 21 | N | A | -0.0072 | |
| 22 | A | A | 0.0000 | |
| 23 | S | A | 0.0000 | |
| 24 | Y | A | 0.5975 | |
| 25 | F | A | 0.5368 | |
| 26 | Y | A | 0.0000 | |
| 27 | T | A | 0.1820 | |
| 28 | A | A | 0.0843 | |
| 29 | L | A | 0.0000 | |
| 30 | G | A | 0.0000 | |
| 31 | T | A | -0.2568 | |
| 32 | Y | A | -0.3730 | |
| 33 | Y | A | 0.0000 | |
| 34 | S | A | -0.6464 | |
| 35 | Q | A | -0.6582 | |
| 36 | P | A | -0.4823 | |
| 37 | T | A | -0.2052 | |
| 38 | V | A | 0.0030 | |
| 39 | A | A | -0.1133 | |
| 40 | L | A | 0.0000 | |
| 41 | P | A | -0.9017 | |
| 42 | G | A | -0.9437 | |
| 43 | V | A | 0.0000 | |
| 44 | A | A | 0.0000 | |
| 45 | N | A | -1.1661 | |
| 46 | Y | A | -0.3350 | |
| 47 | F | A | 0.0000 | |
| 48 | L | A | -0.1623 | |
| 49 | A | A | -0.7385 | |
| 50 | Q | A | 0.0000 | |
| 51 | S | A | 0.0000 | |
| 52 | N | A | -2.3066 | |
| 53 | E | A | -2.7102 | |
| 54 | E | A | 0.0000 | |
| 55 | R | A | -2.7010 | |
| 56 | R | A | -3.1884 | |
| 57 | H | A | 0.0000 | |
| 58 | A | A | 0.0000 | |
| 59 | H | A | -2.0714 | |
| 60 | A | A | -1.2551 | |
| 61 | L | A | 0.0000 | |
| 62 | I | A | -1.3613 | |
| 63 | Q | A | -1.7418 | |
| 64 | Y | A | -1.0519 | |
| 65 | Q | A | 0.0000 | |
| 66 | N | A | -2.6054 | |
| 67 | G | A | -2.0062 | |
| 68 | R | A | -1.9395 | |
| 69 | G | A | -2.0541 | |
| 70 | G | A | -2.3241 | |
| 71 | K | A | -2.3973 | |
| 72 | V | A | -1.3928 | |
| 73 | Q | A | -0.9391 | |
| 74 | F | A | 1.1229 | |
| 75 | S | A | 0.3669 | |
| 76 | A | A | 0.4713 | |
| 77 | I | A | 0.5706 | |
| 78 | Q | A | -0.7242 | |
| 79 | A | A | -0.4725 | |
| 80 | P | A | -0.5055 | |
| 81 | P | A | -1.3791 | |
| 82 | D | A | -2.3551 | |
| 83 | F | A | 0.0000 | |
| 84 | S | A | -1.5087 | |
| 85 | K | A | -2.3381 | |
| 86 | V | A | -1.2425 | |
| 87 | L | A | 0.0000 | |
| 88 | T | A | -1.0083 | |
| 89 | G | A | -1.3621 | |
| 90 | G | A | -1.5296 | |
| 91 | E | A | -2.1609 | |
| 92 | A | A | -1.4089 | |
| 93 | A | A | -0.9221 | |
| 94 | T | A | -0.4543 | |
| 95 | V | A | 0.0462 | |
| 96 | T | A | 0.0000 | |
| 97 | T | A | 0.0000 | |
| 98 | R | A | -0.7067 | |
| 99 | G | A | 0.0000 | |
| 100 | F | A | 0.0000 | |
| 101 | E | A | -0.7653 | |
| 102 | L | A | -0.6591 | |
| 103 | A | A | 0.0000 | |
| 104 | I | A | -1.5038 | |
| 105 | E | A | -2.1249 | |
| 106 | T | A | -1.1172 | |
| 107 | E | A | 0.0000 | |
| 108 | R | A | -2.0293 | |
| 109 | M | A | -1.4235 | |
| 110 | V | A | 0.0000 | |
| 111 | Y | A | -1.2269 | |
| 112 | D | A | -1.8970 | |
| 113 | K | A | -1.6356 | |
| 114 | I | A | 0.0000 | |
| 115 | R | A | -2.0656 | |
| 116 | Y | A | -0.7670 | |
| 117 | I | A | 0.0000 | |
| 118 | Y | A | -1.0957 | |
| 119 | Q | A | -1.9006 | |
| 120 | V | A | -1.5441 | |
| 121 | A | A | 0.0000 | |
| 122 | E | A | -1.9993 | |
| 123 | S | A | -1.8555 | |
| 124 | Q | A | -2.7087 | |
| 125 | R | A | -2.5644 | |
| 126 | D | A | 0.0000 | |
| 127 | F | A | 0.8326 | |
| 128 | A | A | 0.4619 | |
| 129 | L | A | 0.0000 | |
| 130 | T | A | 0.0000 | |
| 131 | G | A | -0.0778 | |
| 132 | F | A | -0.0327 | |
| 133 | L | A | 0.0000 | |
| 134 | Q | A | -2.0079 | |
| 135 | K | A | -2.6112 | |
| 136 | L | A | 0.0000 | |
| 137 | I | A | -1.7167 | |
| 138 | D | A | -2.5014 | |
| 139 | E | A | -1.9865 | |
| 140 | Q | A | 0.0000 | |
| 141 | V | A | -0.5919 | |
| 142 | E | A | -2.2012 | |
| 143 | S | A | -1.8659 | |
| 144 | L | A | 0.0000 | |
| 145 | R | A | -2.9520 | |
| 146 | E | A | -2.5668 | |
| 147 | L | A | 0.0000 | |
| 148 | Q | A | -2.7658 | |
| 149 | E | A | -3.1196 | |
| 150 | L | A | -1.9322 | |
| 151 | Y | A | -2.0120 | |
| 152 | T | A | -2.3311 | |
| 153 | K | A | -2.7889 | |
| 154 | S | A | 0.0000 | |
| 155 | K | A | -2.5375 | |
| 156 | R | A | -2.5852 | |
| 157 | M | A | -0.5186 | |
| 158 | V | A | 1.0081 | |
| 159 | N | A | 0.1066 | |
| 160 | E | A | 0.1269 | |
| 161 | Y | A | 1.0153 | |
| 162 | W | A | 1.2680 | |
| 163 | F | A | -0.0496 | |
| 164 | D | A | -0.4501 | |
| 165 | Q | A | -0.8241 |