| Chain sequence(s) |
A: GHKGHKG
C: GHKGHKG B: GHKGHKG E: GHKGHKG D: GHKGHKG G: GHKGHKG F: GHKGHKG I: GHKGHKG H: GHKGHKG K: GHKGHKG J: GHKGHKG L: GHKGHKG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:05:03)
[INFO] Main: Simulation completed successfully. (00:05:06)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.7859 | |
| 2 | H | A | -2.3583 | |
| 3 | K | A | -2.5142 | |
| 4 | G | A | -2.1423 | |
| 5 | H | A | 0.0000 | |
| 6 | K | A | -3.1823 | |
| 7 | G | A | -2.5831 | |
| 1 | G | B | -1.6230 | |
| 2 | H | B | -2.7968 | |
| 3 | K | B | -3.4839 | |
| 4 | G | B | -2.8897 | |
| 5 | H | B | -3.2170 | |
| 6 | K | B | -3.1551 | |
| 7 | G | B | -2.3062 | |
| 1 | G | C | -1.4731 | |
| 2 | H | C | -2.3790 | |
| 3 | K | C | -2.4355 | |
| 4 | G | C | -2.1383 | |
| 5 | H | C | -2.5444 | |
| 6 | K | C | -3.1422 | |
| 7 | G | C | -3.1116 | |
| 1 | G | D | -1.8469 | |
| 2 | H | D | -2.5318 | |
| 3 | K | D | -3.0193 | |
| 4 | G | D | -2.7871 | |
| 5 | H | D | 0.0000 | |
| 6 | K | D | -2.9185 | |
| 7 | G | D | 0.0000 | |
| 1 | G | E | -1.6466 | |
| 2 | H | E | -2.0582 | |
| 3 | K | E | -2.2631 | |
| 4 | G | E | -1.9709 | |
| 5 | H | E | 0.0000 | |
| 6 | K | E | -2.7924 | |
| 7 | G | E | -2.1516 | |
| 1 | G | F | -1.5646 | |
| 2 | H | F | -1.9652 | |
| 3 | K | F | -2.0253 | |
| 4 | G | F | -1.9042 | |
| 5 | H | F | 0.0000 | |
| 6 | K | F | -3.0479 | |
| 7 | G | F | -2.4890 | |
| 1 | G | G | -1.6932 | |
| 2 | H | G | -2.1409 | |
| 3 | K | G | -2.4547 | |
| 4 | G | G | -2.1899 | |
| 5 | H | G | 0.0000 | |
| 6 | K | G | -3.0009 | |
| 7 | G | G | -2.5572 | |
| 1 | G | H | -1.9947 | |
| 2 | H | H | -2.8003 | |
| 3 | K | H | -3.1099 | |
| 4 | G | H | -2.8250 | |
| 5 | H | H | -3.0442 | |
| 6 | K | H | -3.3611 | |
| 7 | G | H | -2.6503 | |
| 1 | G | I | -1.8445 | |
| 2 | H | I | -2.6788 | |
| 3 | K | I | -3.3406 | |
| 4 | G | I | -2.8220 | |
| 5 | H | I | -3.3706 | |
| 6 | K | I | -3.1037 | |
| 7 | G | I | -2.1837 | |
| 1 | G | J | -1.8954 | |
| 2 | H | J | -2.7400 | |
| 3 | K | J | -3.4406 | |
| 4 | G | J | -2.4741 | |
| 5 | H | J | -2.5744 | |
| 6 | K | J | -2.7950 | |
| 7 | G | J | -2.3575 | |
| 1 | G | K | -2.0437 | |
| 2 | H | K | -2.9192 | |
| 3 | K | K | -3.0542 | |
| 4 | G | K | -2.4123 | |
| 5 | H | K | 0.0000 | |
| 6 | K | K | -2.5291 | |
| 7 | G | K | 0.0000 | |
| 1 | G | L | -1.7353 | |
| 2 | H | L | -2.1583 | |
| 3 | K | L | -2.3888 | |
| 4 | G | L | -1.8961 | |
| 5 | H | L | 0.0000 | |
| 6 | K | L | -2.8992 | |
| 7 | G | L | -2.1449 |