Project name: query_structure

Status: done

Started: 2026-03-17 00:30:08
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Chain sequence(s) A: QVQLQESGGGLVQPGGSLRLSCAASGRIPFITAMGWYRQAPGRQRELLATVTNSGSTNYADSVKGRFTISRDNAKNTVSLQMNSLKAEDTAVYYCNVRRLGNLSDYWGQGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:31)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:32)
Show buried residues

Minimal score value
-3.3345
Maximal score value
1.6381
Average score
-0.8869
Total score value
-103.7711

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.6868
2 V A -1.2204
3 Q A -1.9217
4 L A 0.0000
5 Q A -1.6653
6 E A 0.0000
7 S A -1.1176
8 G A -1.0334
9 G A -0.8081
10 G A -0.0567
11 L A 0.9967
12 V A 0.0288
13 Q A -1.2313
14 P A -1.3444
15 G A -1.2111
16 G A -0.7973
17 S A -1.1971
18 L A -0.9509
19 R A -2.2831
20 L A 0.0000
21 S A -0.9737
22 C A 0.0000
23 A A -1.2675
24 A A -1.2979
25 S A -1.7455
26 G A -1.8982
27 R A -2.0899
28 I A 0.0000
29 P A 0.4003
30 F A 1.6381
31 I A 0.0000
32 T A -0.0995
33 A A -0.5729
34 M A 0.0000
35 G A 0.0000
36 W A 0.0000
37 Y A -0.4407
38 R A -1.3194
39 Q A -2.1948
40 A A -1.9451
41 P A -1.4595
42 G A -1.9716
43 R A -3.3345
44 Q A -3.2547
45 R A -2.9749
46 E A -1.8337
47 L A -0.4950
48 L A 0.0000
49 A A 0.0000
50 T A -0.4750
51 V A 0.0000
52 T A -1.2947
53 N A -1.4150
54 S A -1.1189
55 G A -1.3898
56 S A -1.0011
57 T A -1.0389
58 N A -1.6614
59 Y A -1.4009
60 A A -1.5521
61 D A -2.5507
62 S A -1.7540
63 V A 0.0000
64 K A -2.7481
65 G A -1.7349
66 R A -1.3490
67 F A 0.0000
68 T A -1.1481
69 I A 0.0000
70 S A -0.8293
71 R A -1.5883
72 D A -2.2609
73 N A -2.6250
74 A A -1.7665
75 K A -2.5600
76 N A -2.1485
77 T A -1.5739
78 V A 0.0000
79 S A -0.9183
80 L A 0.0000
81 Q A -1.6099
82 M A 0.0000
83 N A -1.3178
84 S A -1.0439
85 L A 0.0000
86 K A -1.7393
87 A A -1.4748
88 E A -2.0664
89 D A 0.0000
90 T A -0.8131
91 A A 0.0000
92 V A -0.7111
93 Y A 0.0000
94 Y A -0.5798
95 C A 0.0000
96 N A 0.0000
97 V A 0.0000
98 R A -0.8685
99 R A -0.0088
100 L A 1.3418
101 G A 0.1327
102 N A -0.4703
103 L A 0.7331
104 S A -0.1172
105 D A -0.5602
106 Y A -0.0489
107 W A -0.2569
108 G A -0.8596
109 Q A -1.4692
110 G A -1.0168
111 T A 0.0000
112 Q A -1.0764
113 V A 0.0000
114 T A -0.2385
115 V A 0.0000
116 S A -0.6231
117 S A -0.4746
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Laboratory of Theory of Biopolymers 2018