| Chain sequence(s) |
A: QVQLVESGGGSVQAGGSLRLSCTASGFTFSSFGLGWFRQAPGQEREAVAAISSGSSTIYYADSVKGRFTISRDNAKNTVTLQMNNLKPEDTAIYYCAAAGVRAEDGRVRTLPSEYTFWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:53)
[INFO] Main: Simulation completed successfully. (00:01:53)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4920 | |
| 2 | V | A | -0.9133 | |
| 3 | Q | A | -1.0178 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.1906 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.4426 | |
| 8 | G | A | -1.2488 | |
| 9 | G | A | -1.1624 | |
| 10 | G | A | -0.9484 | |
| 11 | S | A | -0.7316 | |
| 12 | V | A | -0.8204 | |
| 13 | Q | A | -1.7376 | |
| 14 | A | A | -1.7996 | |
| 15 | G | A | -1.7469 | |
| 16 | G | A | -1.3335 | |
| 17 | S | A | -1.4029 | |
| 18 | L | A | -1.2005 | |
| 19 | R | A | -2.1098 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4530 | |
| 22 | C | A | 0.0000 | |
| 23 | T | A | -0.1950 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.8701 | |
| 26 | G | A | -1.0012 | |
| 27 | F | A | -0.3275 | |
| 28 | T | A | -0.1575 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -0.7779 | |
| 31 | S | A | -0.5761 | |
| 32 | F | A | -0.3229 | |
| 33 | G | A | -0.4894 | |
| 34 | L | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | 0.0000 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -1.8636 | |
| 40 | A | A | -1.7393 | |
| 41 | P | A | -1.1976 | |
| 42 | G | A | -1.6869 | |
| 43 | Q | A | -2.8210 | |
| 44 | E | A | -3.2815 | |
| 45 | R | A | -2.3785 | |
| 46 | E | A | -1.9270 | |
| 47 | A | A | 0.0000 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | S | A | 0.0000 | |
| 53 | S | A | -1.0161 | |
| 54 | G | A | -0.8089 | |
| 55 | S | A | -0.5090 | |
| 56 | S | A | -0.4755 | |
| 57 | T | A | -0.1483 | |
| 58 | I | A | 0.9057 | |
| 59 | Y | A | 0.2145 | |
| 60 | Y | A | -0.4899 | |
| 61 | A | A | -1.4003 | |
| 62 | D | A | -2.4545 | |
| 63 | S | A | -1.7667 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5803 | |
| 66 | G | A | -1.8668 | |
| 67 | R | A | -1.7614 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.6324 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.3740 | |
| 72 | R | A | -1.1917 | |
| 73 | D | A | -1.7362 | |
| 74 | N | A | -1.8469 | |
| 75 | A | A | -1.4424 | |
| 76 | K | A | -2.3155 | |
| 77 | N | A | -1.6904 | |
| 78 | T | A | -1.0558 | |
| 79 | V | A | 0.0000 | |
| 80 | T | A | -0.7527 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.1373 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.7776 | |
| 85 | N | A | -2.2032 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.2752 | |
| 88 | P | A | -1.7487 | |
| 89 | E | A | -2.2151 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.0736 | |
| 92 | A | A | 0.0000 | |
| 93 | I | A | -0.3727 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.1964 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | A | A | 0.0000 | |
| 100 | G | A | 0.3004 | |
| 101 | V | A | 0.5078 | |
| 102 | R | A | -1.9777 | |
| 103 | A | A | -2.5144 | |
| 104 | E | A | -3.3234 | |
| 105 | D | A | -3.6063 | |
| 106 | G | A | -2.9681 | |
| 107 | R | A | -2.9692 | |
| 108 | V | A | 0.0000 | |
| 109 | R | A | -0.5277 | |
| 110 | T | A | 0.0416 | |
| 111 | L | A | 0.8464 | |
| 112 | P | A | -0.2105 | |
| 113 | S | A | -0.0701 | |
| 114 | E | A | -0.0015 | |
| 115 | Y | A | 0.0000 | |
| 116 | T | A | 0.2600 | |
| 117 | F | A | 0.2961 | |
| 118 | W | A | 0.2980 | |
| 119 | G | A | -0.0290 | |
| 120 | Q | A | -0.8106 | |
| 121 | G | A | 0.0000 | |
| 122 | T | A | -0.6356 | |
| 123 | Q | A | -1.2408 | |
| 124 | V | A | 0.0000 | |
| 125 | T | A | -0.9604 | |
| 126 | V | A | 0.0000 | |
| 127 | S | A | -1.2016 | |
| 128 | S | A | -0.8555 |