Project name: N_1

Status: done

Started: 2025-02-27 09:29:47
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Chain sequence(s) A: MGSHHHHHHMKKDDQIAAAIALRGMAKDGKFAVKGGGGSGGGGMQKKNQIAAAIVLRGLAKDGKFANTGGGGSGGGGMKKSDKIAAAIVLRGLAKDGKFAAAGGGGSGGGGQNKNDQIAAAIVLRGLAKGGKFANAGGGGSGGGGKKKNDQIAAALVLRGVAKSGKFAGAGGGGSGGGGITRNDEIAAAIVLRGMAKGGRFFASGGG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:20)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:22)
Show buried residues

Minimal score value
-4.4529
Maximal score value
2.9428
Average score
-1.0073
Total score value
-208.5208

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.4528
2 G A -0.5965
3 S A -1.5638
4 H A -2.3536
5 H A -2.5768
6 H A -2.9489
7 H A -3.6266
8 H A -3.8964
9 H A -4.1292
10 M A -3.4660
11 K A -4.4487
12 K A -4.4529
13 D A -4.0622
14 D A -3.3471
15 Q A -1.9954
16 I A -0.3938
17 A A -0.6060
18 A A 0.0000
19 A A 0.4603
20 I A 1.7433
21 A A 0.0000
22 L A 0.0000
23 R A -0.7502
24 G A -0.7833
25 M A 0.0000
26 A A -1.6490
27 K A -2.8948
28 D A -3.1044
29 G A -2.3187
30 K A -2.6812
31 F A -1.2498
32 A A -1.0967
33 V A -1.8002
34 K A -2.7291
35 G A 0.0000
36 G A -1.5827
37 G A -1.3673
38 G A 0.0000
39 S A -1.4419
40 G A -1.6925
41 G A -1.6117
42 G A -1.4622
43 G A -1.9558
44 M A -2.1312
45 Q A -2.5074
46 K A -2.9409
47 K A -2.9536
48 N A -1.9634
49 Q A 0.0000
50 I A -1.2658
51 A A 0.0000
52 A A 0.0000
53 A A 0.0000
54 I A 0.0000
55 V A 0.0000
56 L A 0.2581
57 R A -0.9093
58 G A -0.1572
59 L A 0.1982
60 A A -1.0828
61 K A -2.4621
62 D A -3.2621
63 G A -2.7270
64 K A -2.8101
65 F A -1.7238
66 A A -1.7392
67 N A -2.2320
68 T A -1.5637
69 G A -1.7467
70 G A -1.5470
71 G A -1.3042
72 G A -1.1060
73 S A -1.0822
74 G A -1.5351
75 G A -1.6224
76 G A -1.5616
77 G A -1.8229
78 M A -2.1905
79 K A -3.3504
80 K A -2.8521
81 S A -2.8044
82 D A -3.5096
83 K A -2.9672
84 I A 0.0000
85 A A -0.6844
86 A A 0.1551
87 A A 0.8420
88 I A 1.8061
89 V A 2.9428
90 L A 2.8028
91 R A 1.0972
92 G A 1.3095
93 L A 1.9646
94 A A 0.0311
95 K A -1.8589
96 D A -1.7819
97 G A -1.2784
98 K A -1.4184
99 F A 0.7304
100 A A 0.0668
101 A A -0.1177
102 A A 0.0749
103 G A -0.3693
104 G A -0.5159
105 G A -0.0967
106 G A -0.3323
107 S A -0.4726
108 G A -0.8193
109 G A -0.9135
110 G A -0.9245
111 G A 0.0000
112 Q A -1.7406
113 N A -2.1475
114 K A 0.0000
115 N A 0.0000
116 D A -1.3983
117 Q A -0.3546
118 I A 0.0000
119 A A 0.0000
120 A A 0.0032
121 A A 0.0000
122 I A 0.0000
123 V A 0.0000
124 L A -0.2488
125 R A -0.7083
126 G A -0.2440
127 L A 0.9389
128 A A -0.3186
129 K A -1.7674
130 G A -1.9373
131 G A -2.1717
132 K A -2.0637
133 F A 0.0000
134 A A -0.6977
135 N A -0.6808
136 A A -0.5266
137 G A -0.9889
138 G A 0.0000
139 G A -1.2587
140 G A -1.0949
141 S A -1.0149
142 G A -1.3352
143 G A -1.6548
144 G A -1.7821
145 G A -2.0604
146 K A -3.0207
147 K A -2.8923
148 K A -3.3286
149 N A -2.7935
150 D A -1.9280
151 Q A -1.7882
152 I A 0.0000
153 A A 0.0000
154 A A 0.0000
155 A A 0.0000
156 L A 0.0000
157 V A 0.0000
158 L A -0.3430
159 R A 0.0000
160 G A 0.0000
161 V A 0.1276
162 A A -0.4752
163 K A -1.0901
164 S A 0.0000
165 G A -1.1640
166 K A -2.1533
167 F A -1.0882
168 A A -1.0433
169 G A -1.0374
170 A A -0.8345
171 G A -1.0930
172 G A -1.2869
173 G A -1.4943
174 G A -1.3302
175 S A -1.3700
176 G A -1.2300
177 G A -1.1223
178 G A -1.1599
179 G A -1.3651
180 I A -1.1462
181 T A -1.5456
182 R A -2.2441
183 N A -2.1569
184 D A 0.0000
185 E A -0.6141
186 I A -0.3177
187 A A -0.3247
188 A A 0.0000
189 A A 0.0000
190 I A 1.5285
191 V A 1.1671
192 L A 0.0000
193 R A 0.1555
194 G A 0.0353
195 M A 0.2835
196 A A 0.0000
197 K A -0.4416
198 G A 0.0000
199 G A 0.0000
200 R A 0.0334
201 F A 0.8448
202 F A 0.2438
203 A A 0.0427
204 S A -0.5583
205 G A -0.9599
206 G A -1.3611
207 G A -0.9100
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Laboratory of Theory of Biopolymers 2018