| Chain sequence(s) |
A: GHKGHKG
C: GHKGHKG B: GHKGHKG E: GHKGHKG D: GHKGHKG G: GHKGHKG F: GHKGHKG I: GHKGHKG H: GHKGHKG K: GHKGHKG J: GHKGHKG L: GHKGHKG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:38)
[INFO] Main: Simulation completed successfully. (00:04:41)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -2.1281 | |
| 2 | H | A | -2.7141 | |
| 3 | K | A | -3.6422 | |
| 4 | G | A | -3.3099 | |
| 5 | H | A | -4.4599 | |
| 6 | K | A | -3.9113 | |
| 7 | G | A | -2.8179 | |
| 1 | G | B | -2.6247 | |
| 2 | H | B | -3.4433 | |
| 3 | K | B | -4.1264 | |
| 4 | G | B | -3.4964 | |
| 5 | H | B | -3.8419 | |
| 6 | K | B | -3.6874 | |
| 7 | G | B | -2.5542 | |
| 1 | G | C | -3.9663 | |
| 2 | H | C | -3.5840 | |
| 3 | K | C | -4.0942 | |
| 4 | G | C | -3.8840 | |
| 5 | H | C | -4.5906 | |
| 6 | K | C | -4.7905 | |
| 7 | G | C | -3.7998 | |
| 1 | G | D | 0.0000 | |
| 2 | H | D | -3.8759 | |
| 3 | K | D | -4.1848 | |
| 4 | G | D | -3.4047 | |
| 5 | H | D | -4.1420 | |
| 6 | K | D | -3.9837 | |
| 7 | G | D | -3.4751 | |
| 1 | G | E | -3.0528 | |
| 2 | H | E | -3.4196 | |
| 3 | K | E | -4.4645 | |
| 4 | G | E | -4.1134 | |
| 5 | H | E | -4.6187 | |
| 6 | K | E | -4.1291 | |
| 7 | G | E | -3.7756 | |
| 1 | G | F | -4.1023 | |
| 2 | H | F | -4.3092 | |
| 3 | K | F | -4.5850 | |
| 4 | G | F | -3.6352 | |
| 5 | H | F | -3.7311 | |
| 6 | K | F | -3.5708 | |
| 7 | G | F | -3.1718 | |
| 1 | G | G | -3.0464 | |
| 2 | H | G | -2.7431 | |
| 3 | K | G | -3.8302 | |
| 4 | G | G | 0.0000 | |
| 5 | H | G | -4.2316 | |
| 6 | K | G | -4.1998 | |
| 7 | G | G | -3.5219 | |
| 1 | G | H | -3.4083 | |
| 2 | H | H | -3.7987 | |
| 3 | K | H | -4.5040 | |
| 4 | G | H | 0.0000 | |
| 5 | H | H | -4.6213 | |
| 6 | K | H | -4.1750 | |
| 7 | G | H | -3.7154 | |
| 1 | G | I | -4.0736 | |
| 2 | H | I | -4.2154 | |
| 3 | K | I | -4.3755 | |
| 4 | G | I | -3.6892 | |
| 5 | H | I | -3.7131 | |
| 6 | K | I | -3.2989 | |
| 7 | G | I | -2.2970 | |
| 1 | G | J | -3.6550 | |
| 2 | H | J | -3.5394 | |
| 3 | K | J | -3.4413 | |
| 4 | G | J | -3.1975 | |
| 5 | H | J | -3.3940 | |
| 6 | K | J | -3.0707 | |
| 7 | G | J | -2.1745 | |
| 1 | G | K | -2.8025 | |
| 2 | H | K | -2.8080 | |
| 3 | K | K | -3.7568 | |
| 4 | G | K | -3.1639 | |
| 5 | H | K | -3.9488 | |
| 6 | K | K | -4.7762 | |
| 7 | G | K | -3.7316 | |
| 1 | G | L | -3.4229 | |
| 2 | H | L | -4.2664 | |
| 3 | K | L | -4.7330 | |
| 4 | G | L | -3.7329 | |
| 5 | H | L | -3.5552 | |
| 6 | K | L | -3.1177 | |
| 7 | G | L | -2.2796 |