Project name: GHKGHKG12

Status: done

Started: 2026-02-20 13:26:43
Settings
Chain sequence(s) A: GHKGHKG
C: GHKGHKG
B: GHKGHKG
E: GHKGHKG
D: GHKGHKG
G: GHKGHKG
F: GHKGHKG
I: GHKGHKG
H: GHKGHKG
K: GHKGHKG
J: GHKGHKG
L: GHKGHKG
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:41)
Show buried residues

Minimal score value
-4.7905
Maximal score value
0.0
Average score
-3.5386
Total score value
-297.2387

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -2.1281
2 H A -2.7141
3 K A -3.6422
4 G A -3.3099
5 H A -4.4599
6 K A -3.9113
7 G A -2.8179
1 G B -2.6247
2 H B -3.4433
3 K B -4.1264
4 G B -3.4964
5 H B -3.8419
6 K B -3.6874
7 G B -2.5542
1 G C -3.9663
2 H C -3.5840
3 K C -4.0942
4 G C -3.8840
5 H C -4.5906
6 K C -4.7905
7 G C -3.7998
1 G D 0.0000
2 H D -3.8759
3 K D -4.1848
4 G D -3.4047
5 H D -4.1420
6 K D -3.9837
7 G D -3.4751
1 G E -3.0528
2 H E -3.4196
3 K E -4.4645
4 G E -4.1134
5 H E -4.6187
6 K E -4.1291
7 G E -3.7756
1 G F -4.1023
2 H F -4.3092
3 K F -4.5850
4 G F -3.6352
5 H F -3.7311
6 K F -3.5708
7 G F -3.1718
1 G G -3.0464
2 H G -2.7431
3 K G -3.8302
4 G G 0.0000
5 H G -4.2316
6 K G -4.1998
7 G G -3.5219
1 G H -3.4083
2 H H -3.7987
3 K H -4.5040
4 G H 0.0000
5 H H -4.6213
6 K H -4.1750
7 G H -3.7154
1 G I -4.0736
2 H I -4.2154
3 K I -4.3755
4 G I -3.6892
5 H I -3.7131
6 K I -3.2989
7 G I -2.2970
1 G J -3.6550
2 H J -3.5394
3 K J -3.4413
4 G J -3.1975
5 H J -3.3940
6 K J -3.0707
7 G J -2.1745
1 G K -2.8025
2 H K -2.8080
3 K K -3.7568
4 G K -3.1639
5 H K -3.9488
6 K K -4.7762
7 G K -3.7316
1 G L -3.4229
2 H L -4.2664
3 K L -4.7330
4 G L -3.7329
5 H L -3.5552
6 K L -3.1177
7 G L -2.2796
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Laboratory of Theory of Biopolymers 2018