Project name: 801db112a1160a2

Status: done

Started: 2024-12-20 12:05:43
Settings
Chain sequence(s) I: DIQMTQSPSSLSASVGDRVTITCRASQSIHSFLSWYQQKPGKAPKLLINSASTLQSGVPPWFSGSGSGTDFTLTISSLQPEDFATYYCQQSYIAPWTFGQGTKVEIK
input PDB
Selected Chain(s) I
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with I chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:46)
Show buried residues

Minimal score value
-2.7769
Maximal score value
2.7794
Average score
-0.3911
Total score value
-41.4547

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
2 I I 0.7853
3 Q I -0.9622
4 M I -0.6781
5 T I -0.8125
6 Q I -1.0200
7 S I -0.8587
8 P I -0.5209
9 S I -0.7922
10 S I -0.8263
11 L I -0.5755
12 S I -0.8561
13 A I 0.0000
14 S I 0.0561
15 V I 0.9714
16 G I -0.3213
17 D I -1.2431
18 R I -2.0387
19 V I -1.0255
20 T I -0.5124
21 I I 0.0000
22 T I -0.8678
23 C I 0.0000
24 R I -2.7769
25 A I -1.9163
26 S I -1.5064
27 Q I -1.9260
28 S I -1.2672
29 I I -0.5327
36 H I -0.7704
37 S I -0.0267
38 F I 1.4256
39 L I 0.0000
40 S I 0.1011
41 W I 0.0000
42 Y I 0.2134
43 Q I 0.0000
44 Q I -1.3811
45 K I -1.9127
46 P I -1.3533
47 G I -1.6146
48 K I -2.4520
49 A I -1.5807
50 P I -1.4945
51 K I -1.5402
52 L I -0.2607
53 L I 0.0000
54 I I 0.0000
55 N I -0.1811
56 S I 0.3835
57 A I 0.0000
65 S I -0.1760
66 T I -0.1236
67 L I -0.0678
68 Q I -0.6508
69 S I -0.5993
70 G I -0.6008
71 V I -0.2529
72 P I -0.1151
74 P I -0.0866
75 W I 0.3021
76 F I 0.0000
77 S I -0.1423
78 G I -0.3326
79 S I -0.6465
80 G I -0.9557
83 S I -0.7814
84 G I -1.5218
85 T I -1.9705
86 D I -2.3832
87 F I 0.0000
88 T I -0.7980
89 L I 0.0000
90 T I -0.4627
91 I I 0.0000
92 S I -0.9537
93 S I -0.6510
94 L I 0.0000
95 Q I -0.4568
96 P I -0.6011
97 E I -1.7915
98 D I 0.0000
99 F I -0.5118
100 A I 0.0000
101 T I -0.7456
102 Y I 0.0000
103 Y I 0.3062
104 C I 0.0000
105 Q I 0.1141
106 Q I 0.4696
107 S I 1.3102
108 Y I 2.3942
109 I I 2.7794
114 A I 1.5275
115 P I 1.1283
116 W I 1.7490
117 T I 1.2720
118 F I 1.7381
119 G I 0.1124
120 Q I -0.8710
121 G I 0.0000
122 T I 0.0000
123 K I -1.0093
124 V I 0.0000
125 E I -1.3762
126 I I 0.5024
127 K I -1.0562
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018