| Chain sequence(s) |
A: DAARNPVKYGSGKQSSRVPLY
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:12)
[INFO] Main: Simulation completed successfully. (00:00:13)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | D | A | -1.7806 | |
| 2 | A | A | -0.1600 | |
| 3 | A | A | -0.2569 | |
| 4 | R | A | -1.9000 | |
| 5 | N | A | -0.7465 | |
| 6 | P | A | -0.0243 | |
| 7 | V | A | 1.4223 | |
| 8 | K | A | -1.1450 | |
| 9 | Y | A | 0.9931 | |
| 10 | G | A | 0.0403 | |
| 11 | S | A | -0.3360 | |
| 12 | G | A | -0.8209 | |
| 13 | K | A | -2.0117 | |
| 14 | Q | A | -1.5600 | |
| 15 | S | A | -0.4746 | |
| 16 | S | A | -0.5923 | |
| 17 | R | A | -1.5589 | |
| 18 | V | A | 1.3897 | |
| 19 | P | A | 0.3469 | |
| 20 | L | A | 1.7464 | |
| 21 | Y | A | 1.6043 |