Project name: Nb_1

Status: done

Started: 2025-07-23 15:04:01
Settings
Chain sequence(s) A: QVQLVESGGGLVQPGGSLRLSCAASPPVHPTTLAGWFRQAPGQGLEAVARKFLGEEEAELDPRRPGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCADSTGAGVTGPEAAQRSWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:05)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:05)
Show buried residues

Minimal score value
-3.5962
Maximal score value
1.6315
Average score
-0.6899
Total score value
-85.5522

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.6732
2 V A -1.0687
3 Q A -1.1649
4 L A 0.0000
5 V A 0.9949
6 E A 0.3838
7 S A -0.2136
8 G A -0.7280
9 G A 0.0630
10 G A 0.6489
11 L A 1.3139
12 V A 0.0000
13 Q A -1.3915
14 P A -1.5995
15 G A -1.4526
16 G A -1.0436
17 S A -1.4992
18 L A -1.1271
19 R A -2.3471
20 L A 0.0000
21 S A -0.5782
22 C A 0.0000
23 A A -0.1967
24 A A 0.0000
25 S A -0.6970
26 P A -0.9604
27 P A -1.1930
28 V A 0.0000
29 H A -1.3134
30 P A -1.3031
31 T A -0.6599
32 T A 0.0000
33 L A -0.0046
34 A A 0.0000
35 G A 0.0000
36 W A 0.0000
37 F A 0.0000
38 R A 0.0000
39 Q A -0.4598
40 A A -0.8699
41 P A -0.9665
42 G A -1.2379
43 Q A -1.6848
44 G A -0.9079
45 L A 0.2355
46 E A -0.2954
47 A A -0.2159
48 V A 0.0000
49 A A 0.0000
50 R A -0.9744
51 K A 0.0000
52 F A -1.0182
53 L A 0.0000
54 G A -2.1851
55 E A -3.2802
56 E A -3.5962
57 E A -3.5704
58 A A -2.3966
59 E A -2.0893
60 L A -1.2286
61 D A 0.0000
62 P A -1.4132
63 R A -2.0268
64 R A 0.0000
65 P A -1.0752
66 G A -1.1057
67 R A -1.2419
68 F A 0.0000
69 T A -1.0065
70 I A 0.0000
71 S A -1.3468
72 R A -1.6771
73 D A -1.9217
74 N A -2.4985
75 S A -1.8769
76 K A -2.4476
77 N A 0.0000
78 T A 0.0000
79 L A 0.0000
80 Y A 0.0000
81 L A 0.0000
82 Q A -1.6507
83 M A 0.0000
84 N A -2.0449
85 S A -1.4739
86 L A 0.0000
87 R A -2.3630
88 A A -1.7211
89 E A -2.2249
90 D A 0.0000
91 T A -0.3824
92 A A 0.0000
93 V A 0.9546
94 Y A 0.0000
95 Y A 0.4473
96 C A 0.0000
97 A A 0.0000
98 D A 0.0000
99 S A 0.0000
100 T A -0.8283
101 G A -0.6256
102 A A -0.0607
103 G A -0.1423
104 V A 0.1098
105 T A -0.2145
106 G A -0.6779
107 P A -1.0577
108 E A -1.8519
109 A A 0.0000
110 A A -1.0125
111 Q A -1.1493
112 R A -1.9227
113 S A -1.0760
114 W A -0.1055
115 G A -0.0908
116 Q A -0.6894
117 G A 0.1082
118 T A 0.6095
119 L A 1.6315
120 V A 0.0000
121 T A 0.3691
122 V A 0.0000
123 S A -0.7119
124 S A -0.5140
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Laboratory of Theory of Biopolymers 2018