Project name: ntcp

Status: done

Started: 2026-07-22 11:43:21
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Chain sequence(s) A: MEAHNASAPFNFTLPPNFGKRPTDLALSVILVFMLFFIMLSLGCTMEFSKIKAHLWKPKGLAIALVAQYGIMPLTAFVLGKVFRLKNIEALAILVCGCSPGGNLSNVFSLAMKGDMNLSIVMTTCSTFCALGMMPLLLYIYSRGIYDGDLKDKVPYKGIVISLVLVLIPCTIGIVLKSKRPQYMRYVIKGGMIIILLCSVAVTVLSAINVGKSIMFAMTPLLIATSSLMPFIGFLLGYVLSALFCLNGRCRRTVSMETGCQNVQLCSTILNVAFPPEVIGPLFFFPLLYMIFQLGEGLLLIAIFWCYEKFKTPKDKTKMIYTAATTEETIPGALGNGTYKGEDCSPCTA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:17)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:19)
Show buried residues

Minimal score value
-3.5554
Maximal score value
3.4662
Average score
0.0978
Total score value
34.1174

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.0593
2 E A -1.7245
3 A A -1.3751
4 H A -1.9614
5 N A -2.0153
6 A A -0.9581
7 S A -0.4638
8 A A -0.0314
9 P A 0.3350
10 F A 1.3715
11 N A -0.1653
12 F A 0.5079
13 T A 0.1651
14 L A -0.2566
15 P A -0.2638
16 P A -1.0042
17 N A -2.1518
18 F A -1.4491
19 G A -1.4431
20 K A -2.0721
21 R A -1.3074
22 P A -0.4917
23 T A 0.4271
24 D A 0.2472
25 L A 1.4696
26 A A 1.2569
27 L A 0.0000
28 S A 1.9699
29 V A 2.9551
30 I A 2.2140
31 L A 0.0000
32 V A 2.1415
33 F A 2.4051
34 M A 0.0000
35 L A 0.0000
36 F A 1.7098
37 F A 1.4013
38 I A 0.0000
39 M A 0.0000
40 L A 1.2988
41 S A 0.0000
42 L A 0.0000
43 G A 0.0000
44 C A 0.0000
45 T A -0.0511
46 M A 0.0000
47 E A 0.0365
48 F A 1.3143
49 S A -0.0191
50 K A -0.5211
51 I A 0.0000
52 K A -0.2505
53 A A -0.2053
54 H A -0.7626
55 L A 0.0476
56 W A 0.1960
57 K A -1.6818
58 P A -1.3326
59 K A -2.0188
60 G A -0.9426
61 L A -0.1595
62 A A -0.1174
63 I A 0.0000
64 A A 0.0000
65 L A 1.2510
66 V A 1.8425
67 A A 0.0000
68 Q A 0.0000
69 Y A 0.0000
70 G A 0.9186
71 I A 1.1051
72 M A 0.0000
73 P A 0.0000
74 L A 1.7476
75 T A 0.0000
76 A A 0.0000
77 F A 1.4084
78 V A 1.8575
79 L A 0.0000
80 G A 0.0000
81 K A -0.6586
82 V A 1.2409
83 F A 0.1701
84 R A -1.8206
85 L A -1.5652
86 K A -2.6350
87 N A -2.3173
88 I A -0.6262
89 E A 0.0000
90 A A 0.0000
91 L A 0.0000
92 A A 0.0000
93 I A 0.0000
94 L A 0.0000
95 V A 0.0000
96 C A 0.0000
97 G A 0.0000
98 C A 0.0000
99 S A 0.0000
100 P A 0.0000
101 G A 0.0000
102 G A 0.0000
103 N A 0.1277
104 L A 0.7594
105 S A 0.0000
106 N A 1.1225
107 V A 2.2887
108 F A 0.0000
109 S A 0.0000
110 L A 1.3752
111 A A 1.0982
112 M A 0.0000
113 K A -1.3556
114 G A 0.0000
115 D A -1.1994
116 M A -0.0023
117 N A -0.6985
118 L A -0.3990
119 S A 0.0000
120 I A -0.1627
121 V A 0.0000
122 M A 0.0000
123 T A 0.0000
124 T A 0.0000
125 C A 0.0000
126 S A 0.0000
127 T A 0.0000
128 F A 1.2764
129 C A 0.8709
130 A A 0.0000
131 L A 1.3494
132 G A 0.4448
133 M A 0.7895
134 M A 0.0000
135 P A 0.7353
136 L A 1.3790
137 L A 0.0000
138 L A 0.0000
139 Y A 0.9858
140 I A 0.8271
141 Y A 0.6611
142 S A 0.0000
143 R A -2.1183
144 G A -1.2636
145 I A -1.3483
146 Y A 0.0000
147 D A -2.7693
148 G A -2.6286
149 D A -3.5554
150 L A -2.8728
151 K A -3.1871
152 D A -3.2968
153 K A -2.4107
154 V A 0.0000
155 P A -1.1213
156 Y A -0.5671
157 K A -1.0419
158 G A 0.2571
159 I A 0.0000
160 V A 1.0757
161 I A 1.9513
162 S A 0.0000
163 L A 0.0000
164 V A 2.2278
165 L A 1.9531
166 V A 0.0000
167 L A 1.8182
168 I A 2.2588
169 P A 0.0000
170 C A 0.0000
171 T A 1.8106
172 I A 2.6325
173 G A 0.0000
174 I A 1.1323
175 V A 1.2950
176 L A 0.0852
177 K A -0.5142
178 S A -0.6603
179 K A -2.3726
180 R A -2.5870
181 P A -1.8514
182 Q A -1.6170
183 Y A 0.0200
184 M A -0.5275
185 R A -1.3029
186 Y A 0.3355
187 V A 0.0000
188 I A 0.1081
189 K A -1.0365
190 G A 0.2182
191 G A 0.0000
192 M A 1.5912
193 I A 2.1156
194 I A 2.2482
195 I A 2.6005
196 L A 3.4612
197 L A 3.4662
198 C A 0.0000
199 S A 2.3087
200 V A 3.0540
201 A A 2.0744
202 V A 0.0000
203 T A 1.7364
204 V A 2.4566
205 L A 1.8018
206 S A 0.0000
207 A A 1.2082
208 I A 2.1360
209 N A 0.0000
210 V A 0.0000
211 G A -0.3022
212 K A -1.2320
213 S A -0.2332
214 I A 0.2672
215 M A 0.7840
216 F A 1.0908
217 A A 0.0000
218 M A 1.1270
219 T A 0.7708
220 P A 0.4848
221 L A 0.6381
222 L A 0.0000
223 I A 0.8804
224 A A 0.6958
225 T A 0.0000
226 S A 0.0000
227 S A 1.0442
228 L A 1.0786
229 M A 0.0000
230 P A 0.0000
231 F A 1.5944
232 I A 1.5337
233 G A 0.0000
234 F A 0.0000
235 L A 2.0429
236 L A 2.0876
237 G A 0.0000
238 Y A 2.0274
239 V A 2.4823
240 L A 2.2105
241 S A 0.0000
242 A A 1.5544
243 L A 2.4184
244 F A 1.4540
245 C A 1.2247
246 L A 0.0000
247 N A -1.4045
248 G A -1.6956
249 R A -2.4096
250 C A 0.0000
251 R A -0.6805
252 R A -1.0172
253 T A 0.0000
254 V A 0.0000
255 S A 0.0000
256 M A 0.0000
257 E A 0.0000
258 T A 0.0000
259 G A 0.0000
260 C A 0.0000
261 Q A 0.0000
262 N A 0.0000
263 V A 0.0000
264 Q A -0.0629
265 L A 0.0000
266 C A 0.0000
267 S A 0.0000
268 T A 0.0000
269 I A 0.0000
270 L A 0.0000
271 N A 0.7519
272 V A 2.1554
273 A A 0.7383
274 F A 0.0000
275 P A -0.0634
276 P A -0.7106
277 E A -1.2916
278 V A 0.3656
279 I A 0.0000
280 G A 0.0000
281 P A 0.0000
282 L A 0.0000
283 F A 0.0000
284 F A 0.3601
285 F A 0.0000
286 P A 0.0000
287 L A 0.8799
288 L A 0.0000
289 Y A 0.0000
290 M A 1.4764
291 I A 2.4215
292 F A 1.8964
293 Q A 0.0000
294 L A 1.7651
295 G A 1.1761
296 E A 1.0852
297 G A 0.0000
298 L A 2.0227
299 L A 1.9857
300 L A 1.6859
301 I A 0.0000
302 A A 1.7595
303 I A 1.8804
304 F A 1.1875
305 W A 0.9642
306 C A 1.1264
307 Y A 0.9968
308 E A -1.2299
309 K A -1.2026
310 F A 0.4278
311 K A -2.0058
312 T A -1.8110
313 P A -2.4138
314 K A -3.2587
315 D A -2.8499
316 K A -2.4704
317 T A -1.3261
318 K A -1.5314
319 M A 0.4085
320 I A 1.6261
321 Y A 1.5641
322 T A 0.7532
323 A A 0.3424
324 A A -0.1710
325 T A -0.6617
326 T A -0.9990
327 E A -2.2931
328 E A -2.2482
329 T A -0.6548
330 I A 0.7944
331 P A 0.1157
332 G A 0.2846
333 A A 0.5906
334 L A 0.8748
335 G A -0.4870
336 N A -1.2499
337 G A -0.9267
338 T A -0.6057
339 Y A -0.1933
340 K A -2.2202
341 G A -2.2702
342 E A -3.1280
343 D A -3.0403
344 C A -1.0498
345 S A -0.8500
346 P A -0.0084
347 C A 0.6602
348 T A 0.2579
349 A A 0.1918
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Laboratory of Theory of Biopolymers 2018