Project name: S2B1_baseline_Aggrescan3D

Status: done

Started: 2025-11-30 06:58:08
Settings
Chain sequence(s) B: ADPAAAQAAGAGGAAGAGKAAGGGGGGGGAGGAAAGREAAKDAAAAAAGGARGGGGGGGAAIGGGGGVEGAGAGG
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:02)
Show buried residues

Minimal score value
-3.5875
Maximal score value
1.5963
Average score
-1.1546
Total score value
-86.596

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A B -0.8563
2 D B -1.9928
3 P B -1.3392
4 A B -1.0257
5 A B -0.9270
6 A B -1.1126
7 Q B -1.6275
8 A B -0.6707
9 A B -0.5548
10 G B -1.0064
11 A B -0.8883
12 G B -1.0249
13 G B -0.7682
14 A B -0.3962
15 A B -0.4394
16 G B -0.7671
17 A B -0.8041
18 G B -1.3668
19 K B -2.0177
20 A B -1.0192
21 A B -0.8847
22 G B -0.9953
23 G B -1.2258
24 G B -1.1187
25 G B -1.2422
26 G B -1.2713
27 G B -1.2429
28 G B -1.3880
29 G B -1.1222
30 A B -0.8656
31 G B -0.9249
32 G B -1.3012
33 A B -1.6249
34 A B -1.5490
35 A B -1.6504
36 G B -2.2554
37 R B -3.4619
38 E B -3.4628
39 A B -2.4269
40 A B -2.4931
41 K B -3.5875
42 D B -3.0508
43 A B -1.4130
44 A B -1.1213
45 A B -0.9747
46 A B -0.6291
47 A B -0.2999
48 A B -0.2111
49 G B -0.7947
50 G B -1.1284
51 A B -1.3807
52 R B -2.4026
53 G B -1.9244
54 G B -1.7002
55 G B -1.6828
56 G B -1.3275
57 G B -1.2164
58 G B -1.2961
59 G B -0.6763
60 A B 0.0339
61 A B 0.6857
62 I B 1.5963
63 G B 0.2015
64 G B -0.4760
65 G B -0.8575
66 G B -1.0967
67 G B -0.5560
68 V B 0.4170
69 E B -1.5386
70 G B -1.1583
71 A B -0.9049
72 G B -0.9570
73 A B -0.5442
74 G B -0.7829
75 G B -0.7287
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Laboratory of Theory of Biopolymers 2018