| Chain sequence(s) |
A: QVQLVESGGGSVQAGGSLRLSCTASGGSEYSYSTFSCGWFRQAPGQEREAVCAIASMGGLTYYADSVKGRFTCSRDNAKNTCTLQMNNLKPEDTAIYYCAAVRGYFMRLPSSHNFRYWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:14)
[INFO] Main: Simulation completed successfully. (00:01:15)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4563 | |
| 2 | V | A | -0.9948 | |
| 3 | Q | A | -1.0177 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.2266 | |
| 6 | E | A | -0.4757 | |
| 7 | S | A | -0.9387 | |
| 8 | G | A | -1.2815 | |
| 9 | G | A | -1.2393 | |
| 10 | G | A | -0.9526 | |
| 11 | S | A | -0.7203 | |
| 12 | V | A | -0.7675 | |
| 13 | Q | A | -1.7216 | |
| 14 | A | A | -1.8432 | |
| 15 | G | A | -1.7947 | |
| 16 | G | A | -1.4070 | |
| 17 | S | A | -1.4605 | |
| 18 | L | A | -1.2360 | |
| 19 | R | A | -2.1101 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.6834 | |
| 22 | C | A | 0.0000 | |
| 23 | T | A | -0.4730 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.7634 | |
| 26 | G | A | -1.3528 | |
| 27 | G | A | -1.5009 | |
| 28 | S | A | -1.3493 | |
| 29 | E | A | -2.0044 | |
| 30 | Y | A | -1.3911 | |
| 31 | S | A | -1.3571 | |
| 32 | Y | A | 0.0000 | |
| 33 | S | A | -0.8291 | |
| 34 | T | A | -0.5845 | |
| 35 | F | A | 0.0000 | |
| 36 | S | A | 0.0000 | |
| 37 | C | A | 0.0000 | |
| 38 | G | A | 0.0000 | |
| 39 | W | A | 0.0000 | |
| 40 | F | A | 0.0000 | |
| 41 | R | A | -1.2513 | |
| 42 | Q | A | -1.8911 | |
| 43 | A | A | -1.8072 | |
| 44 | P | A | -1.2563 | |
| 45 | G | A | -1.7155 | |
| 46 | Q | A | -2.8086 | |
| 47 | E | A | -3.2388 | |
| 48 | R | A | -2.5409 | |
| 49 | E | A | -1.7601 | |
| 50 | A | A | -0.6753 | |
| 51 | V | A | 0.0000 | |
| 52 | C | A | 0.0000 | |
| 53 | A | A | 0.0000 | |
| 54 | I | A | 0.0000 | |
| 55 | A | A | 0.0000 | |
| 56 | S | A | 0.0000 | |
| 57 | M | A | 0.8316 | |
| 58 | G | A | 0.0124 | |
| 59 | G | A | -0.0043 | |
| 60 | L | A | 0.6567 | |
| 61 | T | A | 0.3992 | |
| 62 | Y | A | 0.2571 | |
| 63 | Y | A | -0.4434 | |
| 64 | A | A | -1.2702 | |
| 65 | D | A | -2.3611 | |
| 66 | S | A | -1.7467 | |
| 67 | V | A | 0.0000 | |
| 68 | K | A | -2.5255 | |
| 69 | G | A | -1.8617 | |
| 70 | R | A | -1.6818 | |
| 71 | F | A | 0.0000 | |
| 72 | T | A | -0.7348 | |
| 73 | C | A | 0.0000 | |
| 74 | S | A | -0.5673 | |
| 75 | R | A | -1.2016 | |
| 76 | D | A | -1.8043 | |
| 77 | N | A | -1.8629 | |
| 78 | A | A | -1.5524 | |
| 79 | K | A | -2.3173 | |
| 80 | N | A | -1.6354 | |
| 81 | T | A | -1.1634 | |
| 82 | C | A | 0.0000 | |
| 83 | T | A | -0.7671 | |
| 84 | L | A | 0.0000 | |
| 85 | Q | A | -1.0600 | |
| 86 | M | A | 0.0000 | |
| 87 | N | A | -1.8150 | |
| 88 | N | A | -2.2732 | |
| 89 | L | A | 0.0000 | |
| 90 | K | A | -2.5327 | |
| 91 | P | A | -1.8295 | |
| 92 | E | A | -2.2776 | |
| 93 | D | A | 0.0000 | |
| 94 | T | A | -1.1416 | |
| 95 | A | A | 0.0000 | |
| 96 | I | A | -0.5870 | |
| 97 | Y | A | 0.0000 | |
| 98 | Y | A | -0.3758 | |
| 99 | C | A | 0.0000 | |
| 100 | A | A | 0.0000 | |
| 101 | A | A | 0.0000 | |
| 102 | V | A | 0.0000 | |
| 103 | R | A | -1.7674 | |
| 104 | G | A | 0.0787 | |
| 105 | Y | A | 1.6301 | |
| 106 | F | A | 1.9640 | |
| 107 | M | A | 0.0000 | |
| 108 | R | A | -0.3539 | |
| 109 | L | A | 1.0228 | |
| 110 | P | A | 0.0000 | |
| 111 | S | A | -0.5623 | |
| 112 | S | A | -1.0686 | |
| 113 | H | A | -1.5924 | |
| 114 | N | A | -1.1422 | |
| 115 | F | A | 0.0000 | |
| 116 | R | A | -2.2000 | |
| 117 | Y | A | -0.9693 | |
| 118 | W | A | -0.3103 | |
| 119 | G | A | -0.4051 | |
| 120 | Q | A | -1.0688 | |
| 121 | G | A | -0.7860 | |
| 122 | T | A | 0.0000 | |
| 123 | Q | A | -1.3554 | |
| 124 | V | A | 0.0000 | |
| 125 | T | A | -0.9619 | |
| 126 | V | A | 0.0000 | |
| 127 | S | A | -1.1244 | |
| 128 | S | A | -0.8336 |