Project name: query_structure

Status: done

Started: 2026-03-17 00:57:03
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Chain sequence(s) A: QVQLVESGGGSVQAGGSLRLSCTASGGSEYSYSTFSCGWFRQAPGQEREAVCAIASMGGLTYYADSVKGRFTCSRDNAKNTCTLQMNNLKPEDTAIYYCAAVRGYFMRLPSSHNFRYWGQGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:14)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:15)
Show buried residues

Minimal score value
-3.2388
Maximal score value
1.964
Average score
-0.7927
Total score value
-101.4676

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.4563
2 V A -0.9948
3 Q A -1.0177
4 L A 0.0000
5 V A 0.2266
6 E A -0.4757
7 S A -0.9387
8 G A -1.2815
9 G A -1.2393
10 G A -0.9526
11 S A -0.7203
12 V A -0.7675
13 Q A -1.7216
14 A A -1.8432
15 G A -1.7947
16 G A -1.4070
17 S A -1.4605
18 L A -1.2360
19 R A -2.1101
20 L A 0.0000
21 S A -0.6834
22 C A 0.0000
23 T A -0.4730
24 A A 0.0000
25 S A -0.7634
26 G A -1.3528
27 G A -1.5009
28 S A -1.3493
29 E A -2.0044
30 Y A -1.3911
31 S A -1.3571
32 Y A 0.0000
33 S A -0.8291
34 T A -0.5845
35 F A 0.0000
36 S A 0.0000
37 C A 0.0000
38 G A 0.0000
39 W A 0.0000
40 F A 0.0000
41 R A -1.2513
42 Q A -1.8911
43 A A -1.8072
44 P A -1.2563
45 G A -1.7155
46 Q A -2.8086
47 E A -3.2388
48 R A -2.5409
49 E A -1.7601
50 A A -0.6753
51 V A 0.0000
52 C A 0.0000
53 A A 0.0000
54 I A 0.0000
55 A A 0.0000
56 S A 0.0000
57 M A 0.8316
58 G A 0.0124
59 G A -0.0043
60 L A 0.6567
61 T A 0.3992
62 Y A 0.2571
63 Y A -0.4434
64 A A -1.2702
65 D A -2.3611
66 S A -1.7467
67 V A 0.0000
68 K A -2.5255
69 G A -1.8617
70 R A -1.6818
71 F A 0.0000
72 T A -0.7348
73 C A 0.0000
74 S A -0.5673
75 R A -1.2016
76 D A -1.8043
77 N A -1.8629
78 A A -1.5524
79 K A -2.3173
80 N A -1.6354
81 T A -1.1634
82 C A 0.0000
83 T A -0.7671
84 L A 0.0000
85 Q A -1.0600
86 M A 0.0000
87 N A -1.8150
88 N A -2.2732
89 L A 0.0000
90 K A -2.5327
91 P A -1.8295
92 E A -2.2776
93 D A 0.0000
94 T A -1.1416
95 A A 0.0000
96 I A -0.5870
97 Y A 0.0000
98 Y A -0.3758
99 C A 0.0000
100 A A 0.0000
101 A A 0.0000
102 V A 0.0000
103 R A -1.7674
104 G A 0.0787
105 Y A 1.6301
106 F A 1.9640
107 M A 0.0000
108 R A -0.3539
109 L A 1.0228
110 P A 0.0000
111 S A -0.5623
112 S A -1.0686
113 H A -1.5924
114 N A -1.1422
115 F A 0.0000
116 R A -2.2000
117 Y A -0.9693
118 W A -0.3103
119 G A -0.4051
120 Q A -1.0688
121 G A -0.7860
122 T A 0.0000
123 Q A -1.3554
124 V A 0.0000
125 T A -0.9619
126 V A 0.0000
127 S A -1.1244
128 S A -0.8336
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Laboratory of Theory of Biopolymers 2018