Project name: lanm_A6

Status: done

Started: 2026-07-27 01:21:30
Settings
Chain sequence(s) A: APTTTTKVDIAAFNPDKDGTIELKEALAAASAAFDKLDPDKDGTLEAKELKGRVSEADLKKADPDNDGTLEKKEYLAAVEAQFKAANPDNDGTIEARELASPAGSALVNLIR
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:00)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:01)
Show buried residues

Minimal score value
-4.1858
Maximal score value
0.0
Average score
-1.5591
Total score value
-174.6184

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -0.1006
2 P A -0.2998
3 T A -0.2344
4 T A -0.4993
5 T A -0.8367
6 T A -1.2139
7 K A -2.1317
8 V A -1.6249
9 D A -2.0475
10 I A -1.5245
11 A A -1.7154
12 A A -1.0351
13 F A 0.0000
14 N A 0.0000
15 P A -1.9194
16 D A -3.3219
17 K A -3.5415
18 D A -3.4692
19 G A -2.3102
20 T A -1.9775
21 I A 0.0000
22 E A -1.4285
23 L A -0.9934
24 K A -1.6252
25 E A 0.0000
26 A A 0.0000
27 L A -0.2059
28 A A -0.1798
29 A A -0.3047
30 A A 0.0000
31 S A -0.6898
32 A A -0.9171
33 A A 0.0000
34 F A 0.0000
35 D A -3.0379
36 K A -3.0373
37 L A 0.0000
38 D A 0.0000
39 P A -2.7325
40 D A -3.6891
41 K A -4.1083
42 D A -3.6206
43 G A -2.9030
44 T A -2.5540
45 L A 0.0000
46 E A -1.8473
47 A A -2.2981
48 K A -2.7245
49 E A -2.1089
50 L A 0.0000
51 K A -3.0886
52 G A -2.0796
53 R A -2.2155
54 V A -1.7061
55 S A -2.2911
56 E A -3.2142
57 A A -2.4805
58 D A -3.0809
59 L A -2.9130
60 K A -4.1858
61 K A -3.6963
62 A A -2.6899
63 D A 0.0000
64 P A -2.6107
65 D A -3.5592
66 N A -3.8266
67 D A -3.5990
68 G A -2.6104
69 T A -2.3381
70 L A 0.0000
71 E A -2.7554
72 K A -2.3380
73 K A -2.4437
74 E A -2.0291
75 Y A 0.0000
76 L A -0.7454
77 A A -0.7448
78 A A -0.8765
79 V A 0.0000
80 E A -1.0462
81 A A -0.8376
82 Q A -0.8426
83 F A 0.0000
84 K A -2.6052
85 A A -1.4044
86 A A 0.0000
87 N A 0.0000
88 P A -2.2147
89 D A -3.3740
90 N A -3.5574
91 D A -3.5105
92 G A -2.5104
93 T A -2.0579
94 I A 0.0000
95 E A -2.2890
96 A A -1.8971
97 R A -2.2835
98 E A -1.7592
99 L A 0.0000
100 A A -1.1550
101 S A -0.6358
102 P A -0.3028
103 A A -0.4946
104 G A 0.0000
105 S A -0.2559
106 A A -0.4830
107 L A 0.0000
108 V A 0.0000
109 N A -1.2204
110 L A -0.7678
111 I A 0.0000
112 R A -2.1856
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Laboratory of Theory of Biopolymers 2018