Project name: N_2

Status: done

Started: 2025-02-27 09:30:05
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Chain sequence(s) A: MGSHHHHHHMKKDDQIAAAIALRGMAKDGKFAVKEAAAKMQKKNQIAAAIVLRGLAKDGKFANTEAAAKMKKSDKIAAAIVLRGLAKDGKFAAAEAAAKQNKNDQIAAAIVLRGLAKGGKFANAEAAAKKKKNDQIAAALVLRGVAKSGKFAGAEAAAKITRNDEIAAAIVLRGMAKGGRFFASGGG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:28)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:29)
Show buried residues

Minimal score value
-4.897
Maximal score value
1.8663
Average score
-1.0462
Total score value
-195.6471

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.5269
2 G A -0.8122
3 S A -1.6442
4 H A -2.3232
5 H A -2.8617
6 H A -2.7968
7 H A -3.0805
8 H A -3.7529
9 H A -3.9916
10 M A -3.5078
11 K A -4.7472
12 K A -4.8970
13 D A -4.3113
14 D A -3.8907
15 Q A -2.9525
16 I A -1.2520
17 A A 0.0000
18 A A -0.8527
19 A A 0.2471
20 I A 1.6782
21 A A 0.9974
22 L A 0.3157
23 R A -0.6384
24 G A 0.0000
25 M A -1.1917
26 A A -1.1985
27 K A -2.9429
28 D A -3.1341
29 G A -2.3749
30 K A -2.6159
31 F A -1.8313
32 A A -1.2412
33 V A -0.7786
34 K A -1.6162
35 E A -1.5000
36 A A 0.0000
37 A A -0.9169
38 A A -1.0842
39 K A 0.0000
40 M A -1.3258
41 Q A -1.8202
42 K A -1.8198
43 K A -2.7963
44 N A -2.1018
45 Q A 0.0000
46 I A 0.0000
47 A A -0.2648
48 A A 0.0000
49 A A 0.0000
50 I A 0.0000
51 V A 0.6052
52 L A -0.4871
53 R A -1.2479
54 G A -1.0294
55 L A -0.1778
56 A A -1.5808
57 K A -2.6796
58 D A -2.8705
59 G A -2.5652
60 K A -2.3956
61 F A -1.3449
62 A A -1.4140
63 N A -1.6528
64 T A -1.4093
65 E A -2.3023
66 A A -1.3366
67 A A 0.0000
68 A A -1.7740
69 K A -2.3858
70 M A 0.0000
71 K A -2.3364
72 K A -1.4203
73 S A -0.8396
74 D A -0.7051
75 K A 0.0000
76 I A 0.7258
77 A A 0.6506
78 A A 0.0000
79 A A 0.0000
80 I A 1.3991
81 V A 0.9937
82 L A 0.0000
83 R A -1.2361
84 G A -0.5905
85 L A 0.5125
86 A A -1.1192
87 K A -2.7411
88 D A -3.2478
89 G A -2.4519
90 K A -1.7565
91 F A 0.9350
92 A A 0.5315
93 A A 0.6453
94 A A 0.0000
95 E A -0.8551
96 A A -1.0573
97 A A -0.9681
98 A A -1.2313
99 K A -2.3407
100 Q A 0.0000
101 N A -2.5115
102 K A -2.2853
103 N A -2.0536
104 D A -1.9966
105 Q A -1.6828
106 I A 0.0000
107 A A 0.0000
108 A A 0.0000
109 A A 0.0000
110 I A 0.0000
111 V A 0.0000
112 L A 0.0000
113 R A -0.9814
114 G A 0.0000
115 L A 0.4166
116 A A 0.0000
117 K A -2.0299
118 G A -1.7509
119 G A -1.7630
120 K A -1.8161
121 F A -0.0573
122 A A -0.6010
123 N A -1.5522
124 A A -1.2928
125 E A -2.5157
126 A A 0.0000
127 A A -0.9227
128 A A 0.0000
129 K A -1.2078
130 K A -0.4881
131 K A -0.4425
132 K A 0.0000
133 N A 0.0000
134 D A 0.0000
135 Q A 0.0000
136 I A 0.0000
137 A A 0.0000
138 A A 0.0000
139 A A 0.0000
140 L A 0.5311
141 V A 0.0000
142 L A 0.0000
143 R A 0.0000
144 G A -0.6011
145 V A 0.2133
146 A A -1.3539
147 K A -2.3484
148 S A -1.8454
149 G A 0.0000
150 K A -1.1723
151 F A 0.0000
152 A A -0.9341
153 G A -1.5619
154 A A -1.9477
155 E A -2.6312
156 A A -1.8337
157 A A -2.4465
158 A A -2.4457
159 K A -3.0996
160 I A 0.0000
161 T A 0.0000
162 R A -2.8763
163 N A -1.8741
164 D A -0.8426
165 E A 0.0000
166 I A 0.8450
167 A A 0.6570
168 A A 0.0000
169 A A 0.9851
170 I A 1.8663
171 V A 0.0000
172 L A -0.0697
173 R A -1.5087
174 G A -1.3903
175 M A -1.2862
176 A A -1.3499
177 K A -2.5463
178 G A -2.1050
179 G A -2.2283
180 R A -2.5721
181 F A -0.5407
182 F A -0.5313
183 A A -0.2873
184 S A -0.5951
185 G A -1.1254
186 G A -0.8023
187 G A -0.8028
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Laboratory of Theory of Biopolymers 2018