Project name: 2F11

Status: done

Started: 2025-11-19 08:02:34
Settings
Chain sequence(s) H: QVQLVQSGAEGRKPGSSVKVSCKVSGDTFSSYAISWVRQAPGQGLEWMGGIIPIFGAADYAQKFKGRVTISADESTSTAYMELSSLRSEDTAVYYCAKGPDYYGSFDPWGQGTLITVSS
L: DIQMTQSPSSLSASVGDRVTITCRASQSIGTYLNWYQQKPGKAPKLLIYDASSLEDGVPSRFSGSGSGTDFTLTISSLQPEDSATYYCQQSYTMPLYTFGQGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:49)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:51)
Show buried residues

Minimal score value
-3.1763
Maximal score value
2.5193
Average score
-0.5795
Total score value
-131.5433

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.8027
2 V H -1.3608
3 Q H -1.4279
4 L H 0.0000
5 V H 0.3822
6 Q H 0.0000
7 S H -0.3616
8 G H -0.3326
9 A H 0.0405
11 E H -0.7119
12 G H -1.1332
13 R H -2.1425
14 K H -2.7629
15 P H -2.3453
16 G H -1.6899
17 S H -1.3576
18 S H -1.4009
19 V H 0.0000
20 K H -1.7872
21 V H 0.0000
22 S H -0.4660
23 C H 0.0000
24 K H -0.6061
25 V H 0.0000
26 S H -1.1129
27 G H -2.0072
28 D H -2.3564
29 T H -1.2578
30 F H 0.0000
35 S H 0.3115
36 S H 0.3739
37 Y H 0.4029
38 A H 0.4416
39 I H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.4902
45 A H -0.8799
46 P H -0.9026
47 G H -1.2161
48 Q H -1.8018
49 G H -1.2596
50 L H 0.0000
51 E H -0.6622
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 G H 0.0000
56 I H 0.0000
57 I H 1.0435
58 P H 0.8641
59 I H 1.9642
62 F H 2.5193
63 G H 0.9183
64 A H 0.6792
65 A H 0.0416
66 D H -0.5983
67 Y H -1.0221
68 A H -1.3712
69 Q H -2.3722
70 K H -2.6218
71 F H 0.0000
72 K H -2.2127
74 G H -1.5583
75 R H -1.3720
76 V H 0.0000
77 T H -0.8277
78 I H 0.0000
79 S H -0.2598
80 A H -0.5384
81 D H -1.2548
82 E H -1.4924
83 S H -1.0553
84 T H -0.8893
85 S H -1.3613
86 T H 0.0000
87 A H 0.0000
88 Y H -0.5112
89 M H 0.0000
90 E H -1.3739
91 L H 0.0000
92 S H -1.1645
93 S H -1.3020
94 L H 0.0000
95 R H -3.1763
96 S H -2.4248
97 E H -2.6003
98 D H 0.0000
99 T H -0.9696
100 A H 0.0000
101 V H 0.5953
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 K H 0.0000
107 G H 0.0000
108 P H -0.2291
109 D H -0.4943
110 Y H 1.1696
112 Y H 1.5499
113 G H 0.0000
114 S H 0.0000
115 F H 0.0000
116 D H -0.6380
117 P H -0.8444
118 W H 0.0000
119 G H 0.0000
120 Q H -1.4020
121 G H -0.5210
122 T H 0.0000
123 L H 0.9787
124 I H 0.0000
125 T H -0.8751
126 V H 0.0000
127 S H -1.5785
128 S H -1.1626
1 D L -2.1448
2 I L 0.0000
3 Q L -2.2191
4 M L 0.0000
5 T L -1.4212
6 Q L 0.0000
7 S L -0.8184
8 P L -0.5124
9 S L -0.8432
10 S L -1.0579
11 L L -0.8153
12 S L -1.1300
13 A L 0.0000
14 S L -0.7953
15 V L 0.0663
16 G L -0.7082
17 D L -1.6909
18 R L -2.3238
19 V L 0.0000
20 T L -0.6092
21 I L 0.0000
22 T L -0.8405
23 C L 0.0000
24 R L -2.7647
25 A L 0.0000
26 S L -1.8018
27 Q L -1.7100
28 S L -0.9502
29 I L 0.0000
36 G L -0.5067
37 T L -0.3229
38 Y L 0.6620
39 L L 0.0000
40 N L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -0.7943
44 Q L 0.0000
45 K L -1.8340
46 P L -1.2868
47 G L -1.6663
48 K L -2.5748
49 A L -1.6025
50 P L 0.0000
51 K L -1.1115
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.3977
56 D L -0.2106
57 A L 0.0000
65 S L -0.3480
66 S L -0.2303
67 L L -0.1511
68 E L -1.0590
69 D L -2.0116
70 G L -1.3087
71 V L -0.8356
72 P L -0.5990
74 S L -0.4445
75 R L -0.7737
76 F L 0.0000
77 S L -0.3264
78 G L -0.2935
79 S L -0.7283
80 G L -1.1017
83 S L -1.1180
84 G L -1.1486
85 T L -1.7042
86 D L -2.2490
87 F L 0.0000
88 T L -0.7603
89 L L 0.0000
90 T L -0.6334
91 I L 0.0000
92 S L -1.4087
93 S L -1.2338
94 L L 0.0000
95 Q L -1.0339
96 P L -1.3032
97 E L -2.0931
98 D L 0.0000
99 S L -1.5630
100 A L 0.0000
101 T L -1.1571
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 S L 0.0000
108 Y L 1.5950
109 T L 0.5817
113 M L 1.1784
114 P L 0.6711
115 L L 0.1074
116 Y L 0.0000
117 T L -0.4782
118 F L 0.0000
119 G L 0.0000
120 Q L -1.4771
121 G L 0.0000
122 T L 0.0000
123 K L -1.9484
124 L L 0.0000
125 E L -2.1801
126 I L -1.0212
127 K L -1.5782
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018