| Chain sequence(s) |
H: QVQLVQSGAEGRKPGSSVKVSCKVSGDTFSSYAISWVRQAPGQGLEWMGGIIPIFGAADYAQKFKGRVTISADESTSTAYMELSSLRSEDTAVYYCAKGPDYYGSFDPWGQGTLITVSS
L: DIQMTQSPSSLSASVGDRVTITCRASQSIGTYLNWYQQKPGKAPKLLIYDASSLEDGVPSRFSGSGSGTDFTLTISSLQPEDSATYYCQQSYTMPLYTFGQGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:49)
[INFO] Main: Simulation completed successfully. (00:01:51)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.8027 | |
| 2 | V | H | -1.3608 | |
| 3 | Q | H | -1.4279 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.3822 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.3616 | |
| 8 | G | H | -0.3326 | |
| 9 | A | H | 0.0405 | |
| 11 | E | H | -0.7119 | |
| 12 | G | H | -1.1332 | |
| 13 | R | H | -2.1425 | |
| 14 | K | H | -2.7629 | |
| 15 | P | H | -2.3453 | |
| 16 | G | H | -1.6899 | |
| 17 | S | H | -1.3576 | |
| 18 | S | H | -1.4009 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.7872 | |
| 21 | V | H | 0.0000 | |
| 22 | S | H | -0.4660 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -0.6061 | |
| 25 | V | H | 0.0000 | |
| 26 | S | H | -1.1129 | |
| 27 | G | H | -2.0072 | |
| 28 | D | H | -2.3564 | |
| 29 | T | H | -1.2578 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | 0.3115 | |
| 36 | S | H | 0.3739 | |
| 37 | Y | H | 0.4029 | |
| 38 | A | H | 0.4416 | |
| 39 | I | H | 0.0000 | |
| 40 | S | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.4902 | |
| 45 | A | H | -0.8799 | |
| 46 | P | H | -0.9026 | |
| 47 | G | H | -1.2161 | |
| 48 | Q | H | -1.8018 | |
| 49 | G | H | -1.2596 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.6622 | |
| 52 | W | H | 0.0000 | |
| 53 | M | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | G | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | I | H | 1.0435 | |
| 58 | P | H | 0.8641 | |
| 59 | I | H | 1.9642 | |
| 62 | F | H | 2.5193 | |
| 63 | G | H | 0.9183 | |
| 64 | A | H | 0.6792 | |
| 65 | A | H | 0.0416 | |
| 66 | D | H | -0.5983 | |
| 67 | Y | H | -1.0221 | |
| 68 | A | H | -1.3712 | |
| 69 | Q | H | -2.3722 | |
| 70 | K | H | -2.6218 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -2.2127 | |
| 74 | G | H | -1.5583 | |
| 75 | R | H | -1.3720 | |
| 76 | V | H | 0.0000 | |
| 77 | T | H | -0.8277 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.2598 | |
| 80 | A | H | -0.5384 | |
| 81 | D | H | -1.2548 | |
| 82 | E | H | -1.4924 | |
| 83 | S | H | -1.0553 | |
| 84 | T | H | -0.8893 | |
| 85 | S | H | -1.3613 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.5112 | |
| 89 | M | H | 0.0000 | |
| 90 | E | H | -1.3739 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -1.1645 | |
| 93 | S | H | -1.3020 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -3.1763 | |
| 96 | S | H | -2.4248 | |
| 97 | E | H | -2.6003 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.9696 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.5953 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | K | H | 0.0000 | |
| 107 | G | H | 0.0000 | |
| 108 | P | H | -0.2291 | |
| 109 | D | H | -0.4943 | |
| 110 | Y | H | 1.1696 | |
| 112 | Y | H | 1.5499 | |
| 113 | G | H | 0.0000 | |
| 114 | S | H | 0.0000 | |
| 115 | F | H | 0.0000 | |
| 116 | D | H | -0.6380 | |
| 117 | P | H | -0.8444 | |
| 118 | W | H | 0.0000 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.4020 | |
| 121 | G | H | -0.5210 | |
| 122 | T | H | 0.0000 | |
| 123 | L | H | 0.9787 | |
| 124 | I | H | 0.0000 | |
| 125 | T | H | -0.8751 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -1.5785 | |
| 128 | S | H | -1.1626 | |
| 1 | D | L | -2.1448 | |
| 2 | I | L | 0.0000 | |
| 3 | Q | L | -2.2191 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -1.4212 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.8184 | |
| 8 | P | L | -0.5124 | |
| 9 | S | L | -0.8432 | |
| 10 | S | L | -1.0579 | |
| 11 | L | L | -0.8153 | |
| 12 | S | L | -1.1300 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -0.7953 | |
| 15 | V | L | 0.0663 | |
| 16 | G | L | -0.7082 | |
| 17 | D | L | -1.6909 | |
| 18 | R | L | -2.3238 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.6092 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | -0.8405 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.7647 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -1.8018 | |
| 27 | Q | L | -1.7100 | |
| 28 | S | L | -0.9502 | |
| 29 | I | L | 0.0000 | |
| 36 | G | L | -0.5067 | |
| 37 | T | L | -0.3229 | |
| 38 | Y | L | 0.6620 | |
| 39 | L | L | 0.0000 | |
| 40 | N | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | -0.7943 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.8340 | |
| 46 | P | L | -1.2868 | |
| 47 | G | L | -1.6663 | |
| 48 | K | L | -2.5748 | |
| 49 | A | L | -1.6025 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.1115 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.3977 | |
| 56 | D | L | -0.2106 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.3480 | |
| 66 | S | L | -0.2303 | |
| 67 | L | L | -0.1511 | |
| 68 | E | L | -1.0590 | |
| 69 | D | L | -2.0116 | |
| 70 | G | L | -1.3087 | |
| 71 | V | L | -0.8356 | |
| 72 | P | L | -0.5990 | |
| 74 | S | L | -0.4445 | |
| 75 | R | L | -0.7737 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.3264 | |
| 78 | G | L | -0.2935 | |
| 79 | S | L | -0.7283 | |
| 80 | G | L | -1.1017 | |
| 83 | S | L | -1.1180 | |
| 84 | G | L | -1.1486 | |
| 85 | T | L | -1.7042 | |
| 86 | D | L | -2.2490 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.7603 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.6334 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.4087 | |
| 93 | S | L | -1.2338 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -1.0339 | |
| 96 | P | L | -1.3032 | |
| 97 | E | L | -2.0931 | |
| 98 | D | L | 0.0000 | |
| 99 | S | L | -1.5630 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -1.1571 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | S | L | 0.0000 | |
| 108 | Y | L | 1.5950 | |
| 109 | T | L | 0.5817 | |
| 113 | M | L | 1.1784 | |
| 114 | P | L | 0.6711 | |
| 115 | L | L | 0.1074 | |
| 116 | Y | L | 0.0000 | |
| 117 | T | L | -0.4782 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | Q | L | -1.4771 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.9484 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -2.1801 | |
| 126 | I | L | -1.0212 | |
| 127 | K | L | -1.5782 |