Project name: AAB-PP3135

Status: done

Started: 2026-03-31 14:37:57
Settings
Chain sequence(s) H: QVQLVESGGGVVQPGESLKISCAASGFTFSSYAMHWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARSTYYYGASGYDYYFEPWGPGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRASQHIRSSLAWYQQKPGKAPKLLIYGASSRATGIPDRFSGSGSGTDFTLTISSLQPEDFATYYCQHTYITPYTFGQGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:02)
Show buried residues

Minimal score value
-3.1593
Maximal score value
2.0314
Average score
-0.5685
Total score value
-131.8927

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
0 Q H -1.3003
1 V H -0.6905
2 Q H -0.7524
3 L H 0.0000
4 V H 1.3172
5 E H 0.5623
6 S H -0.2079
7 G H -0.8132
8 G H 0.1097
9 G H 0.9280
10 V H 1.5553
11 V H 0.0000
12 Q H -1.7790
13 P H -1.9009
14 G H -2.0484
15 E H -2.2045
16 S H -1.6030
17 L H -1.0002
18 K H -1.9406
19 I H 0.0000
20 S H -0.3753
21 C H 0.0000
22 A H -0.0004
23 A H -0.3713
24 S H -0.5323
25 G H -0.8415
26 F H -0.2908
27 T H -0.1856
28 F H 0.0000
29 S H -0.8247
30 S H -0.0879
31 Y H 0.2625
32 A H 0.1272
33 M H 0.0000
34 H H 0.0000
35 W H 0.0000
36 V H 0.0000
37 R H 0.0000
38 Q H -0.7276
39 A H -1.0399
40 P H -0.9800
41 G H -1.5059
42 K H -2.3925
43 G H -1.6394
44 L H 0.0000
45 E H -1.2776
46 W H 0.0000
47 V H 0.0000
48 S H 0.0000
49 A H 0.0000
50 I H 0.0000
51 S H -0.2803
52 G H -0.4778
53 S H -0.7169
54 G H -0.8182
55 G H -0.7431
56 S H -0.2658
57 T H 0.2939
58 Y H 0.6904
59 Y H -0.3029
60 A H -1.1506
61 D H -2.3283
62 S H -1.7211
63 V H 0.0000
64 K H -2.4166
65 G H -1.6988
66 R H -1.2549
67 F H 0.0000
68 T H -0.6635
69 I H 0.0000
70 S H -0.4660
71 R H -1.0814
72 D H -1.6499
73 N H -1.8046
74 S H -1.6352
75 K H -2.4350
76 N H -1.8561
77 T H -1.0181
78 L H 0.0000
79 Y H -0.4855
80 L H 0.0000
81 Q H -1.1267
82 M H 0.0000
83 N H -1.7160
84 S H -1.6469
85 L H 0.0000
86 R H -2.7565
87 A H -1.9073
88 E H -2.3085
89 D H 0.0000
90 T H -0.4280
91 A H 0.0000
92 V H 0.8980
93 Y H 0.0000
94 Y H 0.0000
95 C H 0.0000
96 A H 0.0000
97 R H -0.2728
98 S H 0.0000
99 T H 0.8344
100 Y H 2.0125
101 Y H 1.7755
102 Y H 1.6131
103 G H 0.3981
104 A H -0.0913
105 S H -0.0988
106 G H 0.3164
107 Y H 1.5640
108 D H 1.3439
109 Y H 1.4724
110 Y H 0.6596
111 F H 0.0000
112 E H -0.8177
113 P H -0.8030
114 W H 0.0000
115 G H 0.0000
116 P H -0.4131
117 G H 0.1212
118 T H 0.6985
119 L H 1.7204
120 V H 0.0000
121 T H 0.3669
122 V H 0.0000
123 S H -0.6666
124 S H -0.5958
125 D L -2.0099
126 I L 0.0000
127 Q L -2.1916
128 M L 0.0000
129 T L -1.2848
130 Q L 0.0000
131 S L -0.7331
132 P L -0.5979
133 S L -0.9664
134 S L -1.1332
135 L L -0.6519
136 S L -0.7040
137 A L 0.0000
138 S L -0.1488
139 V L 0.7176
140 G L -0.7084
141 D L -1.6689
142 R L -2.3426
143 V L 0.0000
144 T L -0.6347
145 I L 0.0000
146 T L -0.9690
147 C L 0.0000
148 R L -3.0412
149 A L 0.0000
150 S L -2.2558
151 Q L -2.8582
152 H L -2.5753
153 I L 0.0000
154 R L -2.6040
155 S L -1.4990
156 S L -0.4257
157 L L 0.0000
158 A L 0.0000
159 W L 0.0000
160 Y L 0.0000
161 Q L -1.0263
162 Q L -1.6586
163 K L -2.2128
164 P L -1.4946
165 G L -1.6700
166 K L -2.5642
167 A L -1.5615
168 P L 0.0000
169 K L -1.9989
170 L L 0.0000
171 L L 0.0000
172 I L 0.0000
173 Y L -0.2372
174 G L -0.8745
175 A L 0.0000
176 S L -0.8038
177 S L -0.8474
178 R L -1.6900
179 A L -0.9748
180 T L -0.6051
181 G L -0.9198
182 I L 0.0000
183 P L -1.3875
184 D L -2.3079
185 R L -1.6193
186 F L 0.0000
187 S L -1.0289
188 G L -0.6010
189 S L -0.8345
190 G L -1.4400
191 S L -1.8342
192 G L -2.4332
193 T L -2.6644
194 D L -3.1593
195 F L 0.0000
196 T L -0.9088
197 L L 0.0000
198 T L -0.6135
199 I L 0.0000
200 S L -1.6827
201 S L -1.2899
202 L L 0.0000
203 Q L -0.7789
204 P L -0.6489
205 E L -1.8869
206 D L 0.0000
207 F L -0.5785
208 A L 0.0000
209 T L -1.2883
210 Y L 0.0000
211 Y L 0.0000
212 C L 0.0000
213 Q L 0.0000
214 H L 0.0000
215 T L 1.2338
216 Y L 1.5211
217 I L 2.0314
218 T L 0.8211
219 P L 0.0057
220 Y L 0.0000
221 T L -0.4769
222 F L -0.4952
223 G L 0.0000
224 Q L -1.6137
225 G L 0.0000
226 T L 0.0000
227 K L -2.1588
228 V L 0.0000
229 E L -0.9093
230 I L 0.9387
231 K L -0.7859
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Laboratory of Theory of Biopolymers 2018