| Chain sequence(s) |
H: QVQLVESGGGVVQPGESLKISCAASGFTFSSYAMHWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARSTYYYGASGYDYYFEPWGPGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRASQHIRSSLAWYQQKPGKAPKLLIYGASSRATGIPDRFSGSGSGTDFTLTISSLQPEDFATYYCQHTYITPYTFGQGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:01)
[INFO] Main: Simulation completed successfully. (00:00:02)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 0 | Q | H | -1.3003 | |
| 1 | V | H | -0.6905 | |
| 2 | Q | H | -0.7524 | |
| 3 | L | H | 0.0000 | |
| 4 | V | H | 1.3172 | |
| 5 | E | H | 0.5623 | |
| 6 | S | H | -0.2079 | |
| 7 | G | H | -0.8132 | |
| 8 | G | H | 0.1097 | |
| 9 | G | H | 0.9280 | |
| 10 | V | H | 1.5553 | |
| 11 | V | H | 0.0000 | |
| 12 | Q | H | -1.7790 | |
| 13 | P | H | -1.9009 | |
| 14 | G | H | -2.0484 | |
| 15 | E | H | -2.2045 | |
| 16 | S | H | -1.6030 | |
| 17 | L | H | -1.0002 | |
| 18 | K | H | -1.9406 | |
| 19 | I | H | 0.0000 | |
| 20 | S | H | -0.3753 | |
| 21 | C | H | 0.0000 | |
| 22 | A | H | -0.0004 | |
| 23 | A | H | -0.3713 | |
| 24 | S | H | -0.5323 | |
| 25 | G | H | -0.8415 | |
| 26 | F | H | -0.2908 | |
| 27 | T | H | -0.1856 | |
| 28 | F | H | 0.0000 | |
| 29 | S | H | -0.8247 | |
| 30 | S | H | -0.0879 | |
| 31 | Y | H | 0.2625 | |
| 32 | A | H | 0.1272 | |
| 33 | M | H | 0.0000 | |
| 34 | H | H | 0.0000 | |
| 35 | W | H | 0.0000 | |
| 36 | V | H | 0.0000 | |
| 37 | R | H | 0.0000 | |
| 38 | Q | H | -0.7276 | |
| 39 | A | H | -1.0399 | |
| 40 | P | H | -0.9800 | |
| 41 | G | H | -1.5059 | |
| 42 | K | H | -2.3925 | |
| 43 | G | H | -1.6394 | |
| 44 | L | H | 0.0000 | |
| 45 | E | H | -1.2776 | |
| 46 | W | H | 0.0000 | |
| 47 | V | H | 0.0000 | |
| 48 | S | H | 0.0000 | |
| 49 | A | H | 0.0000 | |
| 50 | I | H | 0.0000 | |
| 51 | S | H | -0.2803 | |
| 52 | G | H | -0.4778 | |
| 53 | S | H | -0.7169 | |
| 54 | G | H | -0.8182 | |
| 55 | G | H | -0.7431 | |
| 56 | S | H | -0.2658 | |
| 57 | T | H | 0.2939 | |
| 58 | Y | H | 0.6904 | |
| 59 | Y | H | -0.3029 | |
| 60 | A | H | -1.1506 | |
| 61 | D | H | -2.3283 | |
| 62 | S | H | -1.7211 | |
| 63 | V | H | 0.0000 | |
| 64 | K | H | -2.4166 | |
| 65 | G | H | -1.6988 | |
| 66 | R | H | -1.2549 | |
| 67 | F | H | 0.0000 | |
| 68 | T | H | -0.6635 | |
| 69 | I | H | 0.0000 | |
| 70 | S | H | -0.4660 | |
| 71 | R | H | -1.0814 | |
| 72 | D | H | -1.6499 | |
| 73 | N | H | -1.8046 | |
| 74 | S | H | -1.6352 | |
| 75 | K | H | -2.4350 | |
| 76 | N | H | -1.8561 | |
| 77 | T | H | -1.0181 | |
| 78 | L | H | 0.0000 | |
| 79 | Y | H | -0.4855 | |
| 80 | L | H | 0.0000 | |
| 81 | Q | H | -1.1267 | |
| 82 | M | H | 0.0000 | |
| 83 | N | H | -1.7160 | |
| 84 | S | H | -1.6469 | |
| 85 | L | H | 0.0000 | |
| 86 | R | H | -2.7565 | |
| 87 | A | H | -1.9073 | |
| 88 | E | H | -2.3085 | |
| 89 | D | H | 0.0000 | |
| 90 | T | H | -0.4280 | |
| 91 | A | H | 0.0000 | |
| 92 | V | H | 0.8980 | |
| 93 | Y | H | 0.0000 | |
| 94 | Y | H | 0.0000 | |
| 95 | C | H | 0.0000 | |
| 96 | A | H | 0.0000 | |
| 97 | R | H | -0.2728 | |
| 98 | S | H | 0.0000 | |
| 99 | T | H | 0.8344 | |
| 100 | Y | H | 2.0125 | |
| 101 | Y | H | 1.7755 | |
| 102 | Y | H | 1.6131 | |
| 103 | G | H | 0.3981 | |
| 104 | A | H | -0.0913 | |
| 105 | S | H | -0.0988 | |
| 106 | G | H | 0.3164 | |
| 107 | Y | H | 1.5640 | |
| 108 | D | H | 1.3439 | |
| 109 | Y | H | 1.4724 | |
| 110 | Y | H | 0.6596 | |
| 111 | F | H | 0.0000 | |
| 112 | E | H | -0.8177 | |
| 113 | P | H | -0.8030 | |
| 114 | W | H | 0.0000 | |
| 115 | G | H | 0.0000 | |
| 116 | P | H | -0.4131 | |
| 117 | G | H | 0.1212 | |
| 118 | T | H | 0.6985 | |
| 119 | L | H | 1.7204 | |
| 120 | V | H | 0.0000 | |
| 121 | T | H | 0.3669 | |
| 122 | V | H | 0.0000 | |
| 123 | S | H | -0.6666 | |
| 124 | S | H | -0.5958 | |
| 125 | D | L | -2.0099 | |
| 126 | I | L | 0.0000 | |
| 127 | Q | L | -2.1916 | |
| 128 | M | L | 0.0000 | |
| 129 | T | L | -1.2848 | |
| 130 | Q | L | 0.0000 | |
| 131 | S | L | -0.7331 | |
| 132 | P | L | -0.5979 | |
| 133 | S | L | -0.9664 | |
| 134 | S | L | -1.1332 | |
| 135 | L | L | -0.6519 | |
| 136 | S | L | -0.7040 | |
| 137 | A | L | 0.0000 | |
| 138 | S | L | -0.1488 | |
| 139 | V | L | 0.7176 | |
| 140 | G | L | -0.7084 | |
| 141 | D | L | -1.6689 | |
| 142 | R | L | -2.3426 | |
| 143 | V | L | 0.0000 | |
| 144 | T | L | -0.6347 | |
| 145 | I | L | 0.0000 | |
| 146 | T | L | -0.9690 | |
| 147 | C | L | 0.0000 | |
| 148 | R | L | -3.0412 | |
| 149 | A | L | 0.0000 | |
| 150 | S | L | -2.2558 | |
| 151 | Q | L | -2.8582 | |
| 152 | H | L | -2.5753 | |
| 153 | I | L | 0.0000 | |
| 154 | R | L | -2.6040 | |
| 155 | S | L | -1.4990 | |
| 156 | S | L | -0.4257 | |
| 157 | L | L | 0.0000 | |
| 158 | A | L | 0.0000 | |
| 159 | W | L | 0.0000 | |
| 160 | Y | L | 0.0000 | |
| 161 | Q | L | -1.0263 | |
| 162 | Q | L | -1.6586 | |
| 163 | K | L | -2.2128 | |
| 164 | P | L | -1.4946 | |
| 165 | G | L | -1.6700 | |
| 166 | K | L | -2.5642 | |
| 167 | A | L | -1.5615 | |
| 168 | P | L | 0.0000 | |
| 169 | K | L | -1.9989 | |
| 170 | L | L | 0.0000 | |
| 171 | L | L | 0.0000 | |
| 172 | I | L | 0.0000 | |
| 173 | Y | L | -0.2372 | |
| 174 | G | L | -0.8745 | |
| 175 | A | L | 0.0000 | |
| 176 | S | L | -0.8038 | |
| 177 | S | L | -0.8474 | |
| 178 | R | L | -1.6900 | |
| 179 | A | L | -0.9748 | |
| 180 | T | L | -0.6051 | |
| 181 | G | L | -0.9198 | |
| 182 | I | L | 0.0000 | |
| 183 | P | L | -1.3875 | |
| 184 | D | L | -2.3079 | |
| 185 | R | L | -1.6193 | |
| 186 | F | L | 0.0000 | |
| 187 | S | L | -1.0289 | |
| 188 | G | L | -0.6010 | |
| 189 | S | L | -0.8345 | |
| 190 | G | L | -1.4400 | |
| 191 | S | L | -1.8342 | |
| 192 | G | L | -2.4332 | |
| 193 | T | L | -2.6644 | |
| 194 | D | L | -3.1593 | |
| 195 | F | L | 0.0000 | |
| 196 | T | L | -0.9088 | |
| 197 | L | L | 0.0000 | |
| 198 | T | L | -0.6135 | |
| 199 | I | L | 0.0000 | |
| 200 | S | L | -1.6827 | |
| 201 | S | L | -1.2899 | |
| 202 | L | L | 0.0000 | |
| 203 | Q | L | -0.7789 | |
| 204 | P | L | -0.6489 | |
| 205 | E | L | -1.8869 | |
| 206 | D | L | 0.0000 | |
| 207 | F | L | -0.5785 | |
| 208 | A | L | 0.0000 | |
| 209 | T | L | -1.2883 | |
| 210 | Y | L | 0.0000 | |
| 211 | Y | L | 0.0000 | |
| 212 | C | L | 0.0000 | |
| 213 | Q | L | 0.0000 | |
| 214 | H | L | 0.0000 | |
| 215 | T | L | 1.2338 | |
| 216 | Y | L | 1.5211 | |
| 217 | I | L | 2.0314 | |
| 218 | T | L | 0.8211 | |
| 219 | P | L | 0.0057 | |
| 220 | Y | L | 0.0000 | |
| 221 | T | L | -0.4769 | |
| 222 | F | L | -0.4952 | |
| 223 | G | L | 0.0000 | |
| 224 | Q | L | -1.6137 | |
| 225 | G | L | 0.0000 | |
| 226 | T | L | 0.0000 | |
| 227 | K | L | -2.1588 | |
| 228 | V | L | 0.0000 | |
| 229 | E | L | -0.9093 | |
| 230 | I | L | 0.9387 | |
| 231 | K | L | -0.7859 |