Project name: test_wei

Status: done

Started: 2024-12-27 01:04:23
Settings
Chain sequence(s) A: GPPVAWGVDLVGAPALHAEGYTGQGVKVAVLDDGIDRRVPNLNVAGGKSFVPSEPDYLVDLNGHGTAVASWVLDVAPDAELYSVKVLGADGSGQYSWIIAGINWAIANGADVILMSLGGPSGSAELAAAVDAAAEAGIFVVAAAGNSGTSGSSSTVSYPAALPSVLAVGAVDRNNQRLPFSSVGPELDVAAPGEDVPVRVPGDTAHSGTCPAAARVAGAAALILSRHPDWTAEEVRRALLETATPLGDAFYYGAGLIDVDKASRLEL
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:44)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:45)
Show buried residues

Minimal score value
-3.309
Maximal score value
1.0667
Average score
-0.5807
Total score value
-155.0531

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.2865
2 P A -0.0935
3 P A 0.2167
4 V A 1.0667
5 A A 0.1744
6 W A -0.5650
7 G A 0.0000
8 V A 0.0000
9 D A -1.2384
10 L A -0.8243
11 V A 0.0000
12 G A -1.1461
13 A A 0.0000
14 P A -0.5114
15 A A -0.8433
16 L A 0.0000
17 H A -0.6513
18 A A -0.6210
19 E A -1.1869
20 G A -1.0162
21 Y A -0.7390
22 T A -1.1111
23 G A 0.0000
24 Q A -2.1222
25 G A -1.6373
26 V A 0.0000
27 K A -1.3199
28 V A 0.0000
29 A A 0.0000
30 V A 0.0000
31 L A 0.0000
32 D A 0.0000
33 D A 0.0000
34 G A 0.0000
35 I A 0.0000
36 D A -1.2361
37 R A -2.7921
38 R A -2.8820
39 V A 0.0000
40 P A -2.0419
41 N A -2.2885
42 L A 0.0000
43 N A -1.5495
44 V A -0.5081
45 A A -0.1591
46 G A -0.3408
47 G A -0.4845
48 K A -0.9937
49 S A 0.0000
50 F A -0.1765
51 V A 0.0000
52 P A -0.4667
53 S A -0.5611
54 E A -0.3469
55 P A -0.7687
56 D A -0.7633
57 Y A -0.4007
58 L A -0.4478
59 V A -0.0160
60 D A 0.0000
61 L A 0.9211
62 N A -0.5811
63 G A -0.2060
64 H A -0.3393
65 G A 0.0000
66 T A 0.0000
67 A A 0.0000
68 V A 0.0000
69 A A 0.0000
70 S A 0.0000
71 W A 0.0000
72 V A 0.0000
73 L A 0.0000
74 D A -0.3905
75 V A 0.0000
76 A A 0.0000
77 P A -1.3856
78 D A -2.3417
79 A A 0.0000
80 E A -1.5847
81 L A 0.0000
82 Y A -0.3116
83 S A 0.0000
84 V A 0.0000
85 K A 0.0000
86 V A 0.0000
87 L A 0.0000
88 G A 0.0000
89 A A -0.7882
90 D A -1.9333
91 G A -1.2891
92 S A -1.3655
93 G A -1.1433
94 Q A -1.0365
95 Y A -0.4661
96 S A -0.3296
97 W A -0.0382
98 I A 0.0000
99 I A -0.2051
100 A A -0.1471
101 G A 0.0000
102 I A 0.0000
103 N A -0.8493
104 W A -0.5357
105 A A 0.0000
106 I A -0.4031
107 A A -0.3668
108 N A -0.8980
109 G A -0.6235
110 A A 0.0000
111 D A -0.8966
112 V A 0.0000
113 I A 0.0000
114 L A 0.0000
115 M A 0.0000
116 S A 0.0000
117 L A -0.1252
118 G A -0.5830
119 G A -0.5335
120 P A -0.5085
121 S A -0.5114
122 G A -0.6594
123 S A -0.6951
124 A A -0.9150
125 E A -1.8026
126 L A 0.0000
127 A A -0.7849
128 A A -0.8182
129 A A 0.0000
130 V A 0.0000
131 D A -1.5123
132 A A -1.1290
133 A A 0.0000
134 A A -1.4029
135 E A -2.1795
136 A A -1.0682
137 G A -1.2680
138 I A 0.0000
139 F A 0.0000
140 V A 0.0000
141 V A 0.0000
142 A A 0.0000
143 A A 0.0000
144 A A 0.0000
145 G A -0.6655
146 N A -1.1977
147 S A -0.7173
148 G A 0.0000
149 T A -0.4489
150 S A -0.6347
151 G A -0.7557
152 S A -0.5951
153 S A -0.5290
154 S A -0.4671
155 T A -0.6114
156 V A 0.0000
157 S A -0.4973
158 Y A -0.0546
159 P A 0.0000
160 A A 0.0000
161 A A -0.3945
162 L A 0.0000
163 P A -0.5348
164 S A -0.7250
165 V A 0.0000
166 L A 0.0000
167 A A 0.0000
168 V A 0.0000
169 G A 0.0000
170 A A 0.0000
171 V A 0.0000
172 D A -2.9379
173 R A -3.3090
174 N A -2.9012
175 N A -2.4139
176 Q A -2.7490
177 R A -2.2935
178 L A 0.0000
179 P A -0.6368
180 F A -0.1518
181 S A 0.0000
182 S A 0.0000
183 V A 0.0000
184 G A 0.0000
185 P A -0.4835
186 E A -0.7801
187 L A 0.0000
188 D A -0.3668
189 V A 0.0000
190 A A 0.0000
191 A A 0.0000
192 P A 0.0000
193 G A 0.0000
194 E A -2.3126
195 D A -2.5719
196 V A 0.0000
197 P A -0.9439
198 V A -0.9521
199 R A -1.3593
200 V A -1.0108
201 P A -0.8632
202 G A -1.0192
203 D A -1.2383
204 T A -1.0345
205 A A -1.3190
206 H A -1.3171
207 S A -1.3004
208 G A 0.0000
209 T A 0.0000
210 C A -0.1555
211 P A 0.0000
212 A A 0.0000
213 A A 0.0000
214 A A 0.0000
215 R A 0.0000
216 V A 0.0000
217 A A 0.0000
218 G A 0.0000
219 A A 0.0000
220 A A 0.0000
221 A A 0.0000
222 L A 0.0000
223 I A 0.0000
224 L A -0.7651
225 S A -0.9639
226 R A -1.0518
227 H A -1.1177
228 P A -1.3012
229 D A -1.9788
230 W A -1.0555
231 T A -1.5184
232 A A 0.0000
233 E A -2.1873
234 E A -1.7249
235 V A 0.0000
236 R A -1.8663
237 R A -2.2984
238 A A 0.0000
239 L A 0.0000
240 L A -1.2578
241 E A -2.3086
242 T A 0.0000
243 A A -1.0083
244 T A -0.4626
245 P A -0.6892
246 L A -0.7555
247 G A -1.4204
248 D A -1.7484
249 A A -0.8118
250 F A -0.4107
251 Y A -0.4537
252 Y A 0.0000
253 G A 0.0000
254 A A -0.5150
255 G A 0.0000
256 L A 0.0000
257 I A 0.0000
258 D A -1.3926
259 V A 0.0000
260 D A -1.6447
261 K A -2.5278
262 A A 0.0000
263 S A 0.0000
264 R A -2.0918
265 L A -1.7442
266 E A -1.2880
267 L A 0.2679
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Laboratory of Theory of Biopolymers 2018