Project name: Linker3

Status: done

Started: 2026-07-22 01:39:11
Settings
Chain sequence(s) A: GCGNLSTCLLGTYTQDAHKLQTYPRTNTGSGTPGGGGSGGGGSGGGGSLAEAKVLANRELDKYGVSDYYKNLINNAKTVEGVKALIDEILAALP
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:52)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:52)
Show buried residues

Minimal score value
-3.3701
Maximal score value
2.6362
Average score
-0.8414
Total score value
-79.087

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.3669
2 C A 0.1820
3 G A -0.5480
4 N A -0.7028
5 L A 0.8859
6 S A 0.5808
7 T A 1.1602
8 C A 1.8907
9 L A 2.6362
10 L A 2.5534
11 G A 1.0893
12 T A 0.7109
13 Y A 1.0084
14 T A -0.5414
15 Q A -2.1432
16 D A -2.3778
17 A A -1.7394
18 H A -2.5258
19 K A -2.3057
20 L A -0.1501
21 Q A -0.9616
22 T A -0.2346
23 Y A 0.6116
24 P A -0.9177
25 R A -2.0229
26 T A -1.6671
27 N A -2.0281
28 T A -1.2657
29 G A -1.0480
30 S A -0.8467
31 G A -0.8187
32 T A -0.6376
33 P A -0.7623
34 G A -1.0406
35 G A -1.1085
36 G A -1.1655
37 G A -1.1763
38 S A -1.0389
39 G A -1.4110
40 G A -1.2172
41 G A -1.2177
42 G A -0.9800
43 S A -0.9027
44 G A -1.1464
45 G A -1.3119
46 G A -1.2562
47 G A -0.9816
48 S A -0.6875
49 L A -0.6300
50 A A -0.2910
51 E A -0.4631
52 A A 0.0000
53 K A -0.5314
54 V A 1.1485
55 L A 0.7388
56 A A 0.0000
57 N A -1.6900
58 R A -2.2137
59 E A -1.8540
60 L A 0.0000
61 D A -3.3701
62 K A -2.7341
63 Y A -0.6091
64 G A -1.3083
65 V A -0.6701
66 S A -0.8908
67 D A -1.7845
68 Y A 0.1808
69 Y A -0.1295
70 K A -1.7251
71 N A -1.9932
72 L A -0.8367
73 I A 0.0000
74 N A -2.2671
75 N A -2.5648
76 A A -2.1211
77 K A -2.3279
78 T A -1.5409
79 V A -1.2689
80 E A -2.2109
81 G A -1.5999
82 V A 0.0000
83 K A -2.2597
84 A A -1.9152
85 L A -1.3272
86 I A 0.0000
87 D A -2.6976
88 E A -2.4915
89 I A 0.0000
90 L A -0.4434
91 A A -0.7080
92 A A -0.3311
93 L A 0.5231
94 P A 0.0664
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Laboratory of Theory of Biopolymers 2018