Project name: query_structure

Status: done

Started: 2026-03-16 23:50:08
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Chain sequence(s) A: KKNMLLVNPIVGIGGLFVGAPMLTANLGISSYAAKKVIDDINTGSAVATIIALVTAVVGGGLITAGIVATTKSLIKKYGAKYSAAW
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:36)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:36)
Show buried residues

Minimal score value
-2.9939
Maximal score value
3.2582
Average score
0.0775
Total score value
6.6608

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -2.7653
2 K A -2.7930
3 N A -1.2477
4 M A 1.2129
5 L A 2.3267
6 L A 2.7392
7 V A 2.3926
8 N A 0.7860
9 P A 1.0434
10 I A 2.2812
11 V A 2.8312
12 G A 1.8223
13 I A 3.2582
14 G A 2.5513
15 G A 1.9300
16 L A 2.6761
17 F A 2.4304
18 V A 2.3720
19 G A 0.8106
20 A A 0.6540
21 P A -0.0692
22 M A 0.4858
23 L A 0.0000
24 T A -0.5215
25 A A -0.5805
26 N A -1.1387
27 L A 0.0000
28 G A -0.7281
29 I A 0.0000
30 S A -0.2781
31 S A -0.2647
32 Y A 0.4154
33 A A 0.0000
34 A A 0.0000
35 K A -2.2635
36 K A -1.9946
37 V A 0.0000
38 I A 0.0000
39 D A -2.9939
40 D A -1.7216
41 I A 0.0000
42 N A -2.2930
43 T A -1.3691
44 G A -1.0496
45 S A -0.2630
46 A A 0.3577
47 V A 0.8341
48 A A 0.6802
49 T A 0.4892
50 I A 0.0000
51 I A 0.8720
52 A A 0.6639
53 L A 0.9079
54 V A 0.0000
55 T A 0.3359
56 A A 0.4990
57 V A 0.7073
58 V A 0.3466
59 G A -0.1104
60 G A -0.4631
61 G A -0.3817
62 L A 0.1266
63 I A 0.0000
64 T A 0.0828
65 A A 0.1832
66 G A -0.2703
67 I A 0.2205
68 V A 0.0000
69 A A 0.0226
70 T A -0.2492
71 T A 0.0000
72 K A -1.1048
73 S A -0.9398
74 L A -0.5832
75 I A -1.1643
76 K A -2.2228
77 K A -1.7843
78 Y A -0.1050
79 G A -0.8670
80 A A -1.2748
81 K A -1.0340
82 Y A 0.3727
83 S A 0.0000
84 A A -0.4920
85 A A 0.7889
86 W A 0.5322
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Laboratory of Theory of Biopolymers 2018