| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVWNNGMAWYRQAPGKEREWVAAIASRGRSTVYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCYVNVGSHYEGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:35)
[INFO] Main: Simulation completed successfully. (00:01:35)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.2926 | |
| 2 | V | A | -0.7081 | |
| 3 | Q | A | -0.9640 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.5923 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.6308 | |
| 8 | G | A | -1.0484 | |
| 9 | G | A | -0.8640 | |
| 10 | G | A | -0.0900 | |
| 11 | L | A | 0.9263 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.2953 | |
| 14 | A | A | -1.3931 | |
| 15 | G | A | -1.3030 | |
| 16 | G | A | -0.8720 | |
| 17 | S | A | -1.1945 | |
| 18 | L | A | -0.9402 | |
| 19 | R | A | -2.1454 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.5189 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.2307 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.5701 | |
| 26 | G | A | -0.8532 | |
| 27 | F | A | -0.3936 | |
| 28 | P | A | -0.8128 | |
| 29 | V | A | 0.0000 | |
| 30 | W | A | -1.5418 | |
| 31 | N | A | -1.7825 | |
| 32 | N | A | -1.2529 | |
| 33 | G | A | -1.2422 | |
| 34 | M | A | 0.0000 | |
| 35 | A | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.3526 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -2.1901 | |
| 40 | A | A | -2.1542 | |
| 41 | P | A | -1.5290 | |
| 42 | G | A | -2.0532 | |
| 43 | K | A | -3.4833 | |
| 44 | E | A | -3.8325 | |
| 45 | R | A | -3.2900 | |
| 46 | E | A | -1.7855 | |
| 47 | W | A | -0.4977 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.4495 | |
| 51 | I | A | 0.0000 | |
| 52 | A | A | -1.1926 | |
| 53 | S | A | -2.0555 | |
| 54 | R | A | -3.1345 | |
| 55 | G | A | -2.5670 | |
| 56 | R | A | -2.6243 | |
| 57 | S | A | -1.1951 | |
| 58 | T | A | 0.0912 | |
| 59 | V | A | 0.8897 | |
| 60 | Y | A | -0.2161 | |
| 61 | A | A | -1.0180 | |
| 62 | D | A | -2.2581 | |
| 63 | S | A | -1.7142 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.4323 | |
| 66 | G | A | -1.7630 | |
| 67 | R | A | -1.4280 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.6996 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.9770 | |
| 72 | R | A | -2.1863 | |
| 73 | D | A | -2.4438 | |
| 74 | N | A | -2.7723 | |
| 75 | A | A | -1.7494 | |
| 76 | K | A | -2.5854 | |
| 77 | N | A | -1.8682 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.9372 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2580 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.3354 | |
| 85 | S | A | -1.1369 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.1867 | |
| 88 | P | A | -1.8988 | |
| 89 | E | A | -2.3049 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.9802 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.7407 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.5594 | |
| 96 | C | A | 0.0000 | |
| 97 | Y | A | -0.9581 | |
| 98 | V | A | 0.0000 | |
| 99 | N | A | -1.7754 | |
| 100 | V | A | -0.6573 | |
| 101 | G | A | -0.8236 | |
| 102 | S | A | -1.1394 | |
| 103 | H | A | -1.7573 | |
| 104 | Y | A | -1.4035 | |
| 105 | E | A | -2.1243 | |
| 106 | G | A | -1.0591 | |
| 107 | Q | A | -1.4481 | |
| 108 | G | A | 0.0000 | |
| 109 | T | A | 0.0000 | |
| 110 | Q | A | -1.1925 | |
| 111 | V | A | 0.0000 | |
| 112 | T | A | -0.3627 | |
| 113 | V | A | 0.0000 | |
| 114 | S | A | -0.7710 |