| Chain sequence(s) |
A: GKGHKGH
C: GKGHKGH B: GKGHKGH E: GKGHKGH D: GKGHKGH G: GKGHKGH F: GKGHKGH I: GKGHKGH H: GKGHKGH K: GKGHKGH J: GKGHKGH M: GKGHKGH L: GKGHKGH O: GKGHKGH N: GKGHKGH Q: GKGHKGH P: GKGHKGH S: GKGHKGH R: GKGHKGH T: GKGHKGH input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:14:28)
[INFO] Main: Simulation completed successfully. (00:14:34)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -2.1658 | |
| 2 | K | A | -2.7904 | |
| 3 | G | A | 0.0000 | |
| 4 | H | A | -1.9438 | |
| 5 | K | A | -1.7717 | |
| 6 | G | A | -1.5723 | |
| 7 | H | A | -2.1627 | |
| 1 | G | B | -2.0978 | |
| 2 | K | B | -2.8350 | |
| 3 | G | B | -2.4297 | |
| 4 | H | B | -2.0989 | |
| 5 | K | B | -2.0054 | |
| 6 | G | B | -1.6322 | |
| 7 | H | B | -2.1892 | |
| 1 | G | C | -2.4786 | |
| 2 | K | C | -3.5242 | |
| 3 | G | C | 0.0000 | |
| 4 | H | C | -2.8213 | |
| 5 | K | C | -2.6736 | |
| 6 | G | C | -1.9363 | |
| 7 | H | C | -2.2512 | |
| 1 | G | D | -2.4398 | |
| 2 | K | D | -3.2772 | |
| 3 | G | D | -2.8952 | |
| 4 | H | D | -3.3215 | |
| 5 | K | D | -2.7307 | |
| 6 | G | D | -1.8446 | |
| 7 | H | D | -2.0313 | |
| 1 | G | E | -2.1555 | |
| 2 | K | E | -3.0592 | |
| 3 | G | E | -3.0150 | |
| 4 | H | E | -2.8109 | |
| 5 | K | E | -2.6397 | |
| 6 | G | E | -1.5923 | |
| 7 | H | E | -1.9193 | |
| 1 | G | F | -2.3395 | |
| 2 | K | F | -2.8983 | |
| 3 | G | F | -2.4693 | |
| 4 | H | F | -2.4005 | |
| 5 | K | F | -2.3364 | |
| 6 | G | F | -1.8323 | |
| 7 | H | F | -2.2120 | |
| 1 | G | G | -1.9791 | |
| 2 | K | G | -2.6261 | |
| 3 | G | G | -1.9734 | |
| 4 | H | G | -1.8998 | |
| 5 | K | G | -1.9949 | |
| 6 | G | G | -1.6291 | |
| 7 | H | G | -2.1616 | |
| 1 | G | H | -1.8333 | |
| 2 | K | H | -2.2872 | |
| 3 | G | H | 0.0000 | |
| 4 | H | H | -1.6429 | |
| 5 | K | H | 0.0000 | |
| 6 | G | H | -1.5104 | |
| 7 | H | H | -2.1160 | |
| 1 | G | I | -1.9173 | |
| 2 | K | I | -2.1626 | |
| 3 | G | I | 0.0000 | |
| 4 | H | I | -1.6557 | |
| 5 | K | I | -1.7470 | |
| 6 | G | I | -1.5414 | |
| 7 | H | I | -2.1284 | |
| 1 | G | J | -1.9436 | |
| 2 | K | J | -2.2289 | |
| 3 | G | J | 0.0000 | |
| 4 | H | J | -1.7819 | |
| 5 | K | J | -1.7257 | |
| 6 | G | J | -1.5852 | |
| 7 | H | J | -2.1605 | |
| 1 | G | K | -1.8799 | |
| 2 | K | K | -2.1447 | |
| 3 | G | K | 0.0000 | |
| 4 | H | K | -1.6524 | |
| 5 | K | K | -1.6983 | |
| 6 | G | K | -1.5921 | |
| 7 | H | K | -2.1699 | |
| 1 | G | L | -1.9520 | |
| 2 | K | L | -2.2563 | |
| 3 | G | L | 0.0000 | |
| 4 | H | L | -1.9003 | |
| 5 | K | L | -1.9010 | |
| 6 | G | L | -1.6217 | |
| 7 | H | L | -2.1808 | |
| 1 | G | M | -2.2317 | |
| 2 | K | M | -2.9855 | |
| 3 | G | M | 0.0000 | |
| 4 | H | M | -2.7682 | |
| 5 | K | M | -2.5546 | |
| 6 | G | M | -2.0363 | |
| 7 | H | M | -2.3342 | |
| 1 | G | N | -2.2378 | |
| 2 | K | N | -3.4212 | |
| 3 | G | N | -3.0191 | |
| 4 | H | N | -2.8347 | |
| 5 | K | N | -3.2098 | |
| 6 | G | N | -2.0748 | |
| 7 | H | N | -2.0494 | |
| 1 | G | O | -2.7959 | |
| 2 | K | O | -3.2743 | |
| 3 | G | O | -2.3468 | |
| 4 | H | O | -2.6267 | |
| 5 | K | O | -2.9762 | |
| 6 | G | O | -2.3849 | |
| 7 | H | O | -2.0363 | |
| 1 | G | P | -1.9639 | |
| 2 | K | P | -2.5322 | |
| 3 | G | P | -2.1961 | |
| 4 | H | P | -2.4463 | |
| 5 | K | P | -2.3903 | |
| 6 | G | P | 0.0000 | |
| 7 | H | P | -2.5349 | |
| 1 | G | Q | -1.8608 | |
| 2 | K | Q | -2.2290 | |
| 3 | G | Q | 0.0000 | |
| 4 | H | Q | -1.8546 | |
| 5 | K | Q | -1.6195 | |
| 6 | G | Q | 0.0000 | |
| 7 | H | Q | -2.2572 | |
| 1 | G | R | -1.9485 | |
| 2 | K | R | -2.3477 | |
| 3 | G | R | 0.0000 | |
| 4 | H | R | -1.6429 | |
| 5 | K | R | -1.6565 | |
| 6 | G | R | 0.0000 | |
| 7 | H | R | -2.0722 | |
| 1 | G | S | -1.9958 | |
| 2 | K | S | -2.5046 | |
| 3 | G | S | 0.0000 | |
| 4 | H | S | -1.8263 | |
| 5 | K | S | -1.6882 | |
| 6 | G | S | -1.5108 | |
| 7 | H | S | -2.1038 | |
| 1 | G | T | -2.2005 | |
| 2 | K | T | -2.8815 | |
| 3 | G | T | 0.0000 | |
| 4 | H | T | -1.9647 | |
| 5 | K | T | -1.7880 | |
| 6 | G | T | -1.5402 | |
| 7 | H | T | -2.1477 |