Project name: 8326581c7d2fc2c

Status: done

Started: 2026-02-11 07:34:30
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Chain sequence(s) A: GKGHKGH
C: GKGHKGH
B: GKGHKGH
E: GKGHKGH
D: GKGHKGH
G: GKGHKGH
F: GKGHKGH
I: GKGHKGH
H: GKGHKGH
K: GKGHKGH
J: GKGHKGH
M: GKGHKGH
L: GKGHKGH
O: GKGHKGH
N: GKGHKGH
Q: GKGHKGH
P: GKGHKGH
S: GKGHKGH
R: GKGHKGH
T: GKGHKGH
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:14:28)
[INFO]       Main:     Simulation completed successfully.                                          (00:14:34)
Show buried residues

Minimal score value
-3.5242
Maximal score value
0.0
Average score
-1.962
Total score value
-274.6851

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -2.1658
2 K A -2.7904
3 G A 0.0000
4 H A -1.9438
5 K A -1.7717
6 G A -1.5723
7 H A -2.1627
1 G B -2.0978
2 K B -2.8350
3 G B -2.4297
4 H B -2.0989
5 K B -2.0054
6 G B -1.6322
7 H B -2.1892
1 G C -2.4786
2 K C -3.5242
3 G C 0.0000
4 H C -2.8213
5 K C -2.6736
6 G C -1.9363
7 H C -2.2512
1 G D -2.4398
2 K D -3.2772
3 G D -2.8952
4 H D -3.3215
5 K D -2.7307
6 G D -1.8446
7 H D -2.0313
1 G E -2.1555
2 K E -3.0592
3 G E -3.0150
4 H E -2.8109
5 K E -2.6397
6 G E -1.5923
7 H E -1.9193
1 G F -2.3395
2 K F -2.8983
3 G F -2.4693
4 H F -2.4005
5 K F -2.3364
6 G F -1.8323
7 H F -2.2120
1 G G -1.9791
2 K G -2.6261
3 G G -1.9734
4 H G -1.8998
5 K G -1.9949
6 G G -1.6291
7 H G -2.1616
1 G H -1.8333
2 K H -2.2872
3 G H 0.0000
4 H H -1.6429
5 K H 0.0000
6 G H -1.5104
7 H H -2.1160
1 G I -1.9173
2 K I -2.1626
3 G I 0.0000
4 H I -1.6557
5 K I -1.7470
6 G I -1.5414
7 H I -2.1284
1 G J -1.9436
2 K J -2.2289
3 G J 0.0000
4 H J -1.7819
5 K J -1.7257
6 G J -1.5852
7 H J -2.1605
1 G K -1.8799
2 K K -2.1447
3 G K 0.0000
4 H K -1.6524
5 K K -1.6983
6 G K -1.5921
7 H K -2.1699
1 G L -1.9520
2 K L -2.2563
3 G L 0.0000
4 H L -1.9003
5 K L -1.9010
6 G L -1.6217
7 H L -2.1808
1 G M -2.2317
2 K M -2.9855
3 G M 0.0000
4 H M -2.7682
5 K M -2.5546
6 G M -2.0363
7 H M -2.3342
1 G N -2.2378
2 K N -3.4212
3 G N -3.0191
4 H N -2.8347
5 K N -3.2098
6 G N -2.0748
7 H N -2.0494
1 G O -2.7959
2 K O -3.2743
3 G O -2.3468
4 H O -2.6267
5 K O -2.9762
6 G O -2.3849
7 H O -2.0363
1 G P -1.9639
2 K P -2.5322
3 G P -2.1961
4 H P -2.4463
5 K P -2.3903
6 G P 0.0000
7 H P -2.5349
1 G Q -1.8608
2 K Q -2.2290
3 G Q 0.0000
4 H Q -1.8546
5 K Q -1.6195
6 G Q 0.0000
7 H Q -2.2572
1 G R -1.9485
2 K R -2.3477
3 G R 0.0000
4 H R -1.6429
5 K R -1.6565
6 G R 0.0000
7 H R -2.0722
1 G S -1.9958
2 K S -2.5046
3 G S 0.0000
4 H S -1.8263
5 K S -1.6882
6 G S -1.5108
7 H S -2.1038
1 G T -2.2005
2 K T -2.8815
3 G T 0.0000
4 H T -1.9647
5 K T -1.7880
6 G T -1.5402
7 H T -2.1477
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Laboratory of Theory of Biopolymers 2018