| Chain sequence(s) |
A: FGGHKGG
C: FGGHKGG B: FGGHKGG E: FGGHKGG D: FGGHKGG G: FGGHKGG F: FGGHKGG I: FGGHKGG H: FGGHKGG K: FGGHKGG J: FGGHKGG L: FGGHKGG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:15)
[INFO] Main: Simulation completed successfully. (00:01:18)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 3.4101 | |
| 2 | G | A | 0.4534 | |
| 3 | G | A | -1.3677 | |
| 4 | H | A | -2.9969 | |
| 5 | K | A | -3.3098 | |
| 6 | G | A | -2.4521 | |
| 7 | G | A | -1.6719 | |
| 1 | F | B | 3.0846 | |
| 2 | G | B | 0.4669 | |
| 3 | G | B | -1.4768 | |
| 4 | H | B | -3.0333 | |
| 5 | K | B | -3.7659 | |
| 6 | G | B | -2.6131 | |
| 7 | G | B | -1.6117 | |
| 1 | F | C | 3.1696 | |
| 2 | G | C | 0.1930 | |
| 3 | G | C | -1.4142 | |
| 4 | H | C | -3.0897 | |
| 5 | K | C | -3.6523 | |
| 6 | G | C | -2.5303 | |
| 7 | G | C | -1.5231 | |
| 1 | F | D | 3.1489 | |
| 2 | G | D | 0.1503 | |
| 3 | G | D | -1.6929 | |
| 4 | H | D | -3.0585 | |
| 5 | K | D | -3.6131 | |
| 6 | G | D | -2.6052 | |
| 7 | G | D | -1.3072 | |
| 1 | F | E | 3.2541 | |
| 2 | G | E | 0.1707 | |
| 3 | G | E | -1.3782 | |
| 4 | H | E | -3.0865 | |
| 5 | K | E | -3.5682 | |
| 6 | G | E | -2.3329 | |
| 7 | G | E | -1.5609 | |
| 1 | F | F | 0.0000 | |
| 2 | G | F | 0.3447 | |
| 3 | G | F | -1.5632 | |
| 4 | H | F | -2.6836 | |
| 5 | K | F | -3.4437 | |
| 6 | G | F | -2.4084 | |
| 7 | G | F | -1.4412 | |
| 1 | F | G | 3.3757 | |
| 2 | G | G | 0.7280 | |
| 3 | G | G | -1.3724 | |
| 4 | H | G | -2.7472 | |
| 5 | K | G | -3.4072 | |
| 6 | G | G | -2.3645 | |
| 7 | G | G | -1.4885 | |
| 1 | F | H | 3.4797 | |
| 2 | G | H | 0.2886 | |
| 3 | G | H | -1.4598 | |
| 4 | H | H | -3.1359 | |
| 5 | K | H | -3.6469 | |
| 6 | G | H | -2.5040 | |
| 7 | G | H | -1.5896 | |
| 1 | F | I | 3.6323 | |
| 2 | G | I | 0.5679 | |
| 3 | G | I | -1.2193 | |
| 4 | H | I | -3.0324 | |
| 5 | K | I | -3.4799 | |
| 6 | G | I | -2.3811 | |
| 7 | G | I | -1.3406 | |
| 1 | F | J | 3.5578 | |
| 2 | G | J | 0.8825 | |
| 3 | G | J | -1.2239 | |
| 4 | H | J | -2.8779 | |
| 5 | K | J | -3.3632 | |
| 6 | G | J | -2.2133 | |
| 7 | G | J | -1.3360 | |
| 1 | F | K | 3.0796 | |
| 2 | G | K | 0.3381 | |
| 3 | G | K | -1.3690 | |
| 4 | H | K | -3.2251 | |
| 5 | K | K | -3.5532 | |
| 6 | G | K | -2.3774 | |
| 7 | G | K | -1.5556 | |
| 1 | F | L | 3.3298 | |
| 2 | G | L | 0.1686 | |
| 3 | G | L | -1.3745 | |
| 4 | H | L | -2.8465 | |
| 5 | K | L | -3.2810 | |
| 6 | G | L | -2.2607 | |
| 7 | G | L | -1.2900 |