| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVMNRWMAWYRQAPGKEREWVAAVASYGETTRYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDWGWWTRAYDYWGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:38)
[INFO] Main: Simulation completed successfully. (00:01:39)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4327 | |
| 2 | V | A | -0.7977 | |
| 3 | Q | A | -0.8183 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.2415 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.5349 | |
| 8 | G | A | -1.0301 | |
| 9 | G | A | -0.8346 | |
| 10 | G | A | -0.0652 | |
| 11 | L | A | 1.0190 | |
| 12 | V | A | 0.0133 | |
| 13 | Q | A | -1.2272 | |
| 14 | A | A | -1.4019 | |
| 15 | G | A | -1.3231 | |
| 16 | G | A | -0.8691 | |
| 17 | S | A | -1.1847 | |
| 18 | L | A | -0.8949 | |
| 19 | R | A | -2.1209 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.3420 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.0122 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.6780 | |
| 26 | G | A | -1.0499 | |
| 27 | F | A | 0.0000 | |
| 28 | P | A | -0.9220 | |
| 29 | V | A | 0.0000 | |
| 30 | M | A | -0.2331 | |
| 31 | N | A | -1.0073 | |
| 32 | R | A | -0.7062 | |
| 33 | W | A | -0.2002 | |
| 34 | M | A | 0.0000 | |
| 35 | A | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.9461 | |
| 38 | R | A | -1.8709 | |
| 39 | Q | A | -2.7104 | |
| 40 | A | A | -2.3574 | |
| 41 | P | A | -1.5236 | |
| 42 | G | A | -2.0238 | |
| 43 | K | A | -3.6435 | |
| 44 | E | A | -4.0508 | |
| 45 | R | A | -3.6940 | |
| 46 | E | A | -3.1104 | |
| 47 | W | A | -1.2688 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | V | A | 0.0000 | |
| 52 | A | A | 0.0000 | |
| 53 | S | A | -0.3062 | |
| 54 | Y | A | 0.2547 | |
| 55 | G | A | -0.7821 | |
| 56 | E | A | -1.5535 | |
| 57 | T | A | -1.1914 | |
| 58 | T | A | -1.3585 | |
| 59 | R | A | -2.1771 | |
| 60 | Y | A | -1.7352 | |
| 61 | A | A | -1.8905 | |
| 62 | D | A | -2.6568 | |
| 63 | S | A | -1.8017 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.8827 | |
| 66 | G | A | -1.7932 | |
| 67 | R | A | -1.4929 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -1.0780 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.6731 | |
| 72 | R | A | -0.7228 | |
| 73 | D | A | -1.3383 | |
| 74 | N | A | -1.3566 | |
| 75 | A | A | -1.2944 | |
| 76 | K | A | -2.2134 | |
| 77 | N | A | -1.4827 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.6416 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2185 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.3721 | |
| 85 | S | A | -1.2000 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.2860 | |
| 88 | P | A | -1.8968 | |
| 89 | E | A | -2.3411 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.0024 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.7940 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.4038 | |
| 96 | C | A | 0.0000 | |
| 97 | N | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | K | A | -0.7357 | |
| 100 | D | A | -0.6590 | |
| 101 | W | A | 0.6833 | |
| 102 | G | A | 0.3800 | |
| 103 | W | A | 1.4622 | |
| 104 | W | A | 1.2858 | |
| 105 | T | A | -0.0172 | |
| 106 | R | A | -1.4882 | |
| 107 | A | A | -0.7975 | |
| 108 | Y | A | -0.9418 | |
| 109 | D | A | -1.7535 | |
| 110 | Y | A | -0.6817 | |
| 111 | W | A | -0.1280 | |
| 112 | G | A | -0.2157 | |
| 113 | Q | A | -0.9324 | |
| 114 | G | A | -0.5399 | |
| 115 | T | A | 0.0000 | |
| 116 | Q | A | -1.2360 | |
| 117 | V | A | 0.0000 | |
| 118 | T | A | -0.3048 | |
| 119 | V | A | 0.0000 | |
| 120 | S | A | -0.7394 |