Project name: query_structure

Status: done

Started: 2026-03-17 00:40:28
Settings
Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCAASGFPVMNRWMAWYRQAPGKEREWVAAVASYGETTRYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDWGWWTRAYDYWGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:39)
Show buried residues

Minimal score value
-4.0508
Maximal score value
1.4622
Average score
-0.8055
Total score value
-96.6543

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.4327
2 V A -0.7977
3 Q A -0.8183
4 L A 0.0000
5 V A 1.2415
6 E A 0.0000
7 S A -0.5349
8 G A -1.0301
9 G A -0.8346
10 G A -0.0652
11 L A 1.0190
12 V A 0.0133
13 Q A -1.2272
14 A A -1.4019
15 G A -1.3231
16 G A -0.8691
17 S A -1.1847
18 L A -0.8949
19 R A -2.1209
20 L A 0.0000
21 S A -0.3420
22 C A 0.0000
23 A A -0.0122
24 A A 0.0000
25 S A -0.6780
26 G A -1.0499
27 F A 0.0000
28 P A -0.9220
29 V A 0.0000
30 M A -0.2331
31 N A -1.0073
32 R A -0.7062
33 W A -0.2002
34 M A 0.0000
35 A A 0.0000
36 W A 0.0000
37 Y A -0.9461
38 R A -1.8709
39 Q A -2.7104
40 A A -2.3574
41 P A -1.5236
42 G A -2.0238
43 K A -3.6435
44 E A -4.0508
45 R A -3.6940
46 E A -3.1104
47 W A -1.2688
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 V A 0.0000
52 A A 0.0000
53 S A -0.3062
54 Y A 0.2547
55 G A -0.7821
56 E A -1.5535
57 T A -1.1914
58 T A -1.3585
59 R A -2.1771
60 Y A -1.7352
61 A A -1.8905
62 D A -2.6568
63 S A -1.8017
64 V A 0.0000
65 K A -2.8827
66 G A -1.7932
67 R A -1.4929
68 F A 0.0000
69 T A -1.0780
70 I A 0.0000
71 S A -0.6731
72 R A -0.7228
73 D A -1.3383
74 N A -1.3566
75 A A -1.2944
76 K A -2.2134
77 N A -1.4827
78 T A 0.0000
79 V A 0.0000
80 Y A -0.6416
81 L A 0.0000
82 Q A -1.2185
83 M A 0.0000
84 N A -1.3721
85 S A -1.2000
86 L A 0.0000
87 K A -2.2860
88 P A -1.8968
89 E A -2.3411
90 D A 0.0000
91 T A -1.0024
92 A A 0.0000
93 V A -0.7940
94 Y A 0.0000
95 Y A -0.4038
96 C A 0.0000
97 N A 0.0000
98 V A 0.0000
99 K A -0.7357
100 D A -0.6590
101 W A 0.6833
102 G A 0.3800
103 W A 1.4622
104 W A 1.2858
105 T A -0.0172
106 R A -1.4882
107 A A -0.7975
108 Y A -0.9418
109 D A -1.7535
110 Y A -0.6817
111 W A -0.1280
112 G A -0.2157
113 Q A -0.9324
114 G A -0.5399
115 T A 0.0000
116 Q A -1.2360
117 V A 0.0000
118 T A -0.3048
119 V A 0.0000
120 S A -0.7394
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Laboratory of Theory of Biopolymers 2018