Project name: riapp1

Status: done

Started: 2024-06-18 14:17:22
Settings
Chain sequence(s) A: KCNTATCATQRLANFLVRSSNNLGPVLPPTNVGSNTY
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:08)
Show buried residues

Minimal score value
-1.7654
Maximal score value
2.3111
Average score
0.032
Total score value
1.185

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.7654
2 C A -0.6387
3 N A -1.3547
4 T A -0.8340
5 A A -0.5617
6 T A -0.8101
7 C A -0.8634
8 A A -1.2137
9 T A -0.5673
10 Q A -1.6411
11 R A -1.2704
12 L A 1.2737
13 A A 0.8187
14 N A 0.6936
15 F A 2.3111
16 L A 2.2677
17 V A 1.8295
18 R A -0.3877
19 S A 0.1795
20 S A -0.3890
21 N A -1.5779
22 N A -1.5965
23 L A 0.3104
24 G A 0.4273
25 P A 0.8775
26 V A 2.1529
27 L A 1.8012
28 P A 0.5666
29 P A 0.2296
30 T A 0.1595
31 N A -0.2130
32 V A 0.9611
33 G A 0.2737
34 S A -0.4300
35 N A -0.9951
36 T A 0.0573
37 Y A 1.1038
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Laboratory of Theory of Biopolymers 2018