Project name: Ivonne 3M

Status: done

Started: 2025-02-21 19:32:01
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Chain sequence(s) A: MAVGFLSNTTSSGDTWIDGYRSMNATVTKAAKVENGFKFTGPGSRATWPVNSRWDIKQYGFVDYNFTIVAMATIHQVPSESTPLLGASLRGNKRTKLIGLSYGAGGKWETVYDGTKTVQGGTWEPGREYQVALMLQDGNKGFVYVDGKLKGNPAMLPTPEERWTEFSHFYFGGDEGDSGSDATLTDVFLYNR
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:12)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:13)
Show buried residues

Minimal score value
-3.5546
Maximal score value
0.9005
Average score
-0.7997
Total score value
-153.5516

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.6554
2 A A 0.4798
3 V A 0.2089
4 G A 0.0000
5 F A 0.1916
6 L A 0.0000
7 S A -1.5302
8 N A -2.1482
9 T A 0.0000
10 T A -1.0379
11 S A -0.9809
12 S A -1.1091
13 G A -1.7511
14 D A -2.4493
15 T A -1.3798
16 W A 0.0000
17 I A -0.6260
18 D A 0.0000
19 G A -0.2853
20 Y A 0.5710
21 R A -0.4965
22 S A -0.4250
23 M A -0.3620
24 N A -0.7628
25 A A 0.0000
26 T A -0.6869
27 V A 0.0000
28 T A -1.5080
29 K A -2.4638
30 A A -1.8967
31 A A -1.5533
32 K A -2.7686
33 V A -1.9556
34 E A -2.9027
35 N A -2.6478
36 G A 0.0000
37 F A 0.0000
38 K A -1.6861
39 F A 0.0000
40 T A -1.1398
41 G A 0.0000
42 P A -1.3466
43 G A -1.6389
44 S A 0.0000
45 R A -1.3994
46 A A 0.0000
47 T A 0.0000
48 W A 0.0000
49 P A -0.3756
50 V A 0.0000
51 N A -1.2818
52 S A -1.3949
53 R A -1.9181
54 W A -0.4461
55 D A -1.2012
56 I A -0.0830
57 K A -1.5179
58 Q A -1.0093
59 Y A 0.0000
60 G A -0.3486
61 F A -0.2196
62 V A 0.0000
63 D A 0.0000
64 Y A -0.1594
65 N A -1.2008
66 F A 0.0000
67 T A 0.0000
68 I A 0.0000
69 V A 0.1896
70 A A 0.0000
71 M A -0.9694
72 A A 0.0000
73 T A -1.9912
74 I A 0.0000
75 H A -1.5911
76 Q A -0.8850
77 V A 0.5043
78 P A -0.4199
79 S A -0.9160
80 E A -1.8662
81 S A -0.9652
82 T A 0.0000
83 P A 0.0000
84 L A 0.0000
85 L A 0.0000
86 G A 0.0000
87 A A 0.0000
88 S A 0.0000
89 L A 0.0000
90 R A -2.4460
91 G A -2.5290
92 N A -2.8895
93 K A -3.5385
94 R A -3.5546
95 T A -2.6154
96 K A -1.9467
97 L A 0.0000
98 I A 0.0000
99 G A 0.0000
100 L A 0.0000
101 S A 0.0000
102 Y A 0.0000
103 G A 0.0000
104 A A -0.5205
105 G A -0.6179
106 G A -0.7147
107 K A -1.0584
108 W A 0.0000
109 E A 0.0000
110 T A 0.0000
111 V A 0.0000
112 Y A -0.7763
113 D A -1.6821
114 G A -1.8498
115 T A -1.1468
116 K A -0.6740
117 T A 0.2609
118 V A 0.9005
119 Q A -0.2324
120 G A -0.7724
121 G A -1.0408
122 T A -0.9748
123 W A 0.0000
124 E A -1.6874
125 P A -1.6871
126 G A -2.3577
127 R A -3.2474
128 E A -3.2635
129 Y A 0.0000
130 Q A -1.8979
131 V A 0.0000
132 A A 0.0000
133 L A 0.0000
134 M A -0.2619
135 L A 0.0000
136 Q A -1.5938
137 D A -2.1517
138 G A 0.0000
139 N A -0.9084
140 K A -0.7939
141 G A 0.0000
142 F A 0.0935
143 V A 0.0000
144 Y A -0.6637
145 V A 0.0000
146 D A -2.3116
147 G A -1.8580
148 K A -2.1563
149 L A -0.9217
150 K A -0.8964
151 G A -0.9874
152 N A -1.2523
153 P A -0.4891
154 A A -0.1869
155 M A 0.4419
156 L A 0.0000
157 P A -0.9816
158 T A -1.2982
159 P A -1.4412
160 E A -2.4748
161 E A -2.4062
162 R A 0.0000
163 W A -0.2910
164 T A -0.8350
165 E A -1.5076
166 F A 0.0000
167 S A -1.1760
168 H A -0.6438
169 F A 0.0000
170 Y A 0.0000
171 F A 0.0000
172 G A 0.0000
173 G A 0.0000
174 D A -1.7837
175 E A -2.5595
176 G A -1.9217
177 D A -2.0244
178 S A -1.5055
179 G A -1.5113
180 S A 0.0000
181 D A -1.0032
182 A A 0.0000
183 T A -0.8995
184 L A 0.0000
185 T A -1.2938
186 D A -1.5058
187 V A 0.0000
188 F A 0.4201
189 L A 0.0000
190 Y A -0.4650
191 N A -1.6986
192 R A -2.3884
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Laboratory of Theory of Biopolymers 2018