Project name: obj1 [mutate: TG114C, LF115C, TS117C, VT116C, GP111C]

Status: done

Started: 2025-02-11 07:12:45
Settings
Chain sequence(s) C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYWGQGTLVTVSS
input PDB
Selected Chain(s) C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues TS117C,VT116C,LF115C,TG114C,GP111C
Energy difference between WT (input) and mutated protein (by FoldX) 19.0944 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:25)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:40)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:04)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:04)
Show buried residues

Aggrescan3D profile | obj1 [mutate: TG114C, LF115C, TS117C, VT116C, GP111C] | Chain CE1V12S25G42G56T69N84G102G113-4-2024ResidueScore
Minimal score value
-3.3296
Maximal score value
2.0886
Average score
-0.6312
Total score value
-75.739

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

Show chain Show residues from to
residue index residue name chain Aggrescan3D score mutation
residue index
residue name
chain
Aggrescan3D score
mutation
1 E C -2.0213
2 V C -0.9467
3 Q C -1.1205
4 L C 0.0000
5 V C 1.1269
6 E C 0.4905
7 S C -0.3087
8 G C -0.9035
9 G C 0.0416
10 G C 0.9491
11 L C 1.4479
12 V C -0.0982
13 Q C -1.3720
14 P C -1.5072
15 G C -1.4193
16 G C -0.9731
17 S C -1.1951
18 L C -0.9236
19 R C -2.1409
20 L C 0.0000
21 S C -0.4951
22 C C 0.0000
23 A C 0.0071
24 A C 0.0000
25 S C -0.1172
26 D C 0.0000
27 F C 1.5453
28 T C 0.2511
29 F C 0.0000
30 R C -2.0325
31 S C -0.8863
32 Y C -1.2160
33 E C -1.1424
34 M C 0.0000
35 S C 0.0000
36 W C 0.0000
37 V C 0.0000
38 R C 0.0000
39 Q C -0.2309
40 A C -0.9391
41 P C -1.2935
42 G C -1.4303
43 K C -2.1251
44 G C -1.0377
45 L C 0.4394
46 E C -0.3694
47 W C 0.3507
48 V C 0.0000
49 S C 0.0000
50 A C 0.0000
51 I C 0.0000
52 S C -0.5831
53 G C -1.2447
54 S C -1.2286
55 G C -1.0817
56 G C -0.7345
57 S C -0.3025
58 T C 0.1989
59 Y C 0.6077
60 Y C -0.3559
61 A C -1.1386
62 D C -2.3443
63 S C -1.7150
64 V C 0.0000
65 K C -2.3847
66 G C -1.6175
67 R C 0.0000
68 F C 0.0000
69 T C -0.6722
70 I C 0.0000
71 S C -0.5624
72 R C -1.3626
73 D C -1.9805
74 N C -2.1901
75 S C -1.7905
76 K C -2.3163
77 N C -1.6453
78 T C 0.0000
79 L C 0.0000
80 Y C -0.6849
81 L C 0.0000
82 Q C -1.2115
83 M C 0.0000
84 N C -1.3111
85 S C -1.2207
86 L C 0.0000
87 R C -2.4841
88 A C -1.9067
89 E C -2.3508
90 D C 0.0000
91 T C -0.3830
92 A C 0.0000
93 I C 1.2221
94 Y C 0.0000
95 Y C 0.7624
96 C C 0.0000
97 A C 0.0000
98 R C 0.0000
99 L C 0.0000
100 R C -3.1825
101 D C -3.3296
102 G C -2.0833
103 F C -1.2274
104 N C -2.4248
105 K C -3.1791
106 G C -1.8943
107 F C -0.9674
108 D C -1.1039
109 Y C -0.2188
110 W C 0.6162
111 P C 0.0000 mutated: GP111C
112 Q C -0.7358
113 G C 0.2762
114 G C 0.7534 mutated: TG114C
115 F C 2.0886 mutated: LF115C
116 T C 0.0000 mutated: VT116C
117 S C 0.3616 mutated: TS117C
118 V C 0.0000
119 S C -0.8052
120 S C -1.0742
residue index residue name chain Aggrescan3D score
mutation
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Laboratory of Theory of Biopolymers 2018