| Chain sequence(s) |
L: CVDWGDVDVASYSPDC
input PDB |
| Selected Chain(s) | L |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with L chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:05)
[INFO] Main: Simulation completed successfully. (00:00:06)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 0 | C | L | 0.7170 | |
| 1 | V | L | 0.3951 | |
| 2 | D | L | -1.7699 | |
| 3 | W | L | 0.8745 | |
| 4 | G | L | -0.8959 | |
| 5 | D | L | -1.8053 | |
| 6 | V | L | 0.9661 | |
| 7 | D | L | -1.2914 | |
| 8 | V | L | 0.9953 | |
| 9 | A | L | 0.2584 | |
| 10 | S | L | 0.1006 | |
| 11 | Y | L | 1.2229 | |
| 12 | S | L | -0.0171 | |
| 13 | P | L | -0.4196 | |
| 14 | D | L | -1.6678 | |
| 15 | C | L | 0.4413 |