Project name: query_structure

Status: done

Started: 2026-03-16 22:59:49
Settings
Chain sequence(s) A: CIPSGQPCPYNENCCSQSCTGGRCD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:09)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:09)
Show buried residues

Minimal score value
-2.968
Maximal score value
0.3431
Average score
-1.5621
Total score value
-39.0525

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 C A 0.3431
2 I A -0.3208
3 P A -0.9463
4 S A -1.6787
5 G A -1.7097
6 Q A -1.9188
7 P A -1.8421
8 C A -1.8245
9 P A -0.7484
10 Y A -0.7186
11 N A -2.4844
12 E A -2.9680
13 N A -2.2380
14 C A 0.0000
15 C A -0.5778
16 S A -1.4801
17 Q A -2.5569
18 S A -2.3182
19 C A -2.4081
20 T A -1.6699
21 G A -1.4908
22 G A -1.8256
23 R A -2.8841
24 C A 0.0000
25 D A -2.7858
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018