Project name: GKGHKGH20

Status: done

Started: 2026-02-23 05:04:30
Settings
Chain sequence(s) A: GKGHKGH
C: GKGHKGH
B: GKGHKGH
E: GKGHKGH
D: GKGHKGH
G: GKGHKGH
F: GKGHKGH
I: GKGHKGH
H: GKGHKGH
K: GKGHKGH
J: GKGHKGH
M: GKGHKGH
L: GKGHKGH
O: GKGHKGH
N: GKGHKGH
Q: GKGHKGH
P: GKGHKGH
S: GKGHKGH
R: GKGHKGH
T: GKGHKGH
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:07:26)
[INFO]       Main:     Simulation completed successfully.                                          (00:07:31)
Show buried residues

Minimal score value
-6.032
Maximal score value
0.0
Average score
-3.4055
Total score value
-476.7647

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -2.7870
2 K A -3.6891
3 G A -4.1050
4 H A -3.9253
5 K A -4.3567
6 G A 0.0000
7 H A -3.6582
1 G B -2.4980
2 K B -3.5383
3 G B -3.7858
4 H B -4.1100
5 K B -4.3778
6 G B -3.5373
7 H B -3.9194
1 G C -3.0555
2 K C -3.4670
3 G C -3.4662
4 H C -2.8665
5 K C -3.9541
6 G C -2.7935
7 H C -2.7087
1 G D -4.0291
2 K D -4.4285
3 G D 0.0000
4 H D -4.0073
5 K D -4.0168
6 G D -2.7747
7 H D -2.9244
1 G E -3.6531
2 K E -4.8996
3 G E 0.0000
4 H E -3.7268
5 K E -4.5531
6 G E -3.1577
7 H E -2.8480
1 G F -1.6822
2 K F -3.1986
3 G F -2.8206
4 H F -3.7956
5 K F -4.2948
6 G F -3.2050
7 H F -3.9867
1 G G -1.6005
2 K G -2.6490
3 G G -2.4826
4 H G -2.8138
5 K G -2.9515
6 G G -2.1084
7 H G -1.6612
1 G H -4.0238
2 K H -4.8788
3 G H -3.7239
4 H H -3.7588
5 K H -3.8573
6 G H -2.5252
7 H H -3.2461
1 G I -2.8003
2 K I -3.5852
3 G I -3.4789
4 H I -4.1629
5 K I -4.7581
6 G I -4.1340
7 H I -3.7199
1 G J -4.0625
2 K J -4.3986
3 G J -3.9163
4 H J -3.8985
5 K J -3.9128
6 G J -2.8129
7 H J -3.5552
1 G K -3.6320
2 K K -3.9732
3 G K -3.6750
4 H K -4.1715
5 K K -4.5407
6 G K -4.0877
7 H K -4.1732
1 G L -2.5143
2 K L -3.1430
3 G L -3.0475
4 H L -3.5375
5 K L -4.3023
6 G L -3.6722
7 H L -3.9847
1 G M -3.2452
2 K M -3.5139
3 G M -4.4823
4 H M -4.8797
5 K M -4.8064
6 G M 0.0000
7 H M -4.5416
1 G N -2.7241
2 K N -3.5116
3 G N 0.0000
4 H N -3.8155
5 K N -3.7289
6 G N -3.5367
7 H N -3.3732
1 G O -2.4851
2 K O -3.9218
3 G O -3.7802
4 H O -4.1458
5 K O -3.5998
6 G O -2.5529
7 H O -3.0056
1 G P -2.8049
2 K P -3.7923
3 G P -3.6871
4 H P -4.2977
5 K P -4.3192
6 G P -3.0049
7 H P -2.5429
1 G Q 0.0000
2 K Q -6.0320
3 G Q 0.0000
4 H Q -3.8215
5 K Q -4.2122
6 G Q -2.8997
7 H Q -3.4914
1 G R -3.9444
2 K R -4.8691
3 G R 0.0000
4 H R -4.5946
5 K R -4.8907
6 G R -3.7975
7 H R -3.0337
1 G S -2.6346
2 K S -3.8284
3 G S -3.5472
4 H S -4.6674
5 K S -4.2525
6 G S -4.2301
7 H S -3.6561
1 G T -2.7227
2 K T -3.2100
3 G T -3.5220
4 H T -3.9451
5 K T -4.8031
6 G T 0.0000
7 H T -5.5256
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Laboratory of Theory of Biopolymers 2018