| Chain sequence(s) |
A: GKGHKGH
C: GKGHKGH B: GKGHKGH E: GKGHKGH D: GKGHKGH G: GKGHKGH F: GKGHKGH I: GKGHKGH H: GKGHKGH K: GKGHKGH J: GKGHKGH M: GKGHKGH L: GKGHKGH O: GKGHKGH N: GKGHKGH Q: GKGHKGH P: GKGHKGH S: GKGHKGH R: GKGHKGH T: GKGHKGH input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:07:26)
[INFO] Main: Simulation completed successfully. (00:07:31)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -2.7870 | |
| 2 | K | A | -3.6891 | |
| 3 | G | A | -4.1050 | |
| 4 | H | A | -3.9253 | |
| 5 | K | A | -4.3567 | |
| 6 | G | A | 0.0000 | |
| 7 | H | A | -3.6582 | |
| 1 | G | B | -2.4980 | |
| 2 | K | B | -3.5383 | |
| 3 | G | B | -3.7858 | |
| 4 | H | B | -4.1100 | |
| 5 | K | B | -4.3778 | |
| 6 | G | B | -3.5373 | |
| 7 | H | B | -3.9194 | |
| 1 | G | C | -3.0555 | |
| 2 | K | C | -3.4670 | |
| 3 | G | C | -3.4662 | |
| 4 | H | C | -2.8665 | |
| 5 | K | C | -3.9541 | |
| 6 | G | C | -2.7935 | |
| 7 | H | C | -2.7087 | |
| 1 | G | D | -4.0291 | |
| 2 | K | D | -4.4285 | |
| 3 | G | D | 0.0000 | |
| 4 | H | D | -4.0073 | |
| 5 | K | D | -4.0168 | |
| 6 | G | D | -2.7747 | |
| 7 | H | D | -2.9244 | |
| 1 | G | E | -3.6531 | |
| 2 | K | E | -4.8996 | |
| 3 | G | E | 0.0000 | |
| 4 | H | E | -3.7268 | |
| 5 | K | E | -4.5531 | |
| 6 | G | E | -3.1577 | |
| 7 | H | E | -2.8480 | |
| 1 | G | F | -1.6822 | |
| 2 | K | F | -3.1986 | |
| 3 | G | F | -2.8206 | |
| 4 | H | F | -3.7956 | |
| 5 | K | F | -4.2948 | |
| 6 | G | F | -3.2050 | |
| 7 | H | F | -3.9867 | |
| 1 | G | G | -1.6005 | |
| 2 | K | G | -2.6490 | |
| 3 | G | G | -2.4826 | |
| 4 | H | G | -2.8138 | |
| 5 | K | G | -2.9515 | |
| 6 | G | G | -2.1084 | |
| 7 | H | G | -1.6612 | |
| 1 | G | H | -4.0238 | |
| 2 | K | H | -4.8788 | |
| 3 | G | H | -3.7239 | |
| 4 | H | H | -3.7588 | |
| 5 | K | H | -3.8573 | |
| 6 | G | H | -2.5252 | |
| 7 | H | H | -3.2461 | |
| 1 | G | I | -2.8003 | |
| 2 | K | I | -3.5852 | |
| 3 | G | I | -3.4789 | |
| 4 | H | I | -4.1629 | |
| 5 | K | I | -4.7581 | |
| 6 | G | I | -4.1340 | |
| 7 | H | I | -3.7199 | |
| 1 | G | J | -4.0625 | |
| 2 | K | J | -4.3986 | |
| 3 | G | J | -3.9163 | |
| 4 | H | J | -3.8985 | |
| 5 | K | J | -3.9128 | |
| 6 | G | J | -2.8129 | |
| 7 | H | J | -3.5552 | |
| 1 | G | K | -3.6320 | |
| 2 | K | K | -3.9732 | |
| 3 | G | K | -3.6750 | |
| 4 | H | K | -4.1715 | |
| 5 | K | K | -4.5407 | |
| 6 | G | K | -4.0877 | |
| 7 | H | K | -4.1732 | |
| 1 | G | L | -2.5143 | |
| 2 | K | L | -3.1430 | |
| 3 | G | L | -3.0475 | |
| 4 | H | L | -3.5375 | |
| 5 | K | L | -4.3023 | |
| 6 | G | L | -3.6722 | |
| 7 | H | L | -3.9847 | |
| 1 | G | M | -3.2452 | |
| 2 | K | M | -3.5139 | |
| 3 | G | M | -4.4823 | |
| 4 | H | M | -4.8797 | |
| 5 | K | M | -4.8064 | |
| 6 | G | M | 0.0000 | |
| 7 | H | M | -4.5416 | |
| 1 | G | N | -2.7241 | |
| 2 | K | N | -3.5116 | |
| 3 | G | N | 0.0000 | |
| 4 | H | N | -3.8155 | |
| 5 | K | N | -3.7289 | |
| 6 | G | N | -3.5367 | |
| 7 | H | N | -3.3732 | |
| 1 | G | O | -2.4851 | |
| 2 | K | O | -3.9218 | |
| 3 | G | O | -3.7802 | |
| 4 | H | O | -4.1458 | |
| 5 | K | O | -3.5998 | |
| 6 | G | O | -2.5529 | |
| 7 | H | O | -3.0056 | |
| 1 | G | P | -2.8049 | |
| 2 | K | P | -3.7923 | |
| 3 | G | P | -3.6871 | |
| 4 | H | P | -4.2977 | |
| 5 | K | P | -4.3192 | |
| 6 | G | P | -3.0049 | |
| 7 | H | P | -2.5429 | |
| 1 | G | Q | 0.0000 | |
| 2 | K | Q | -6.0320 | |
| 3 | G | Q | 0.0000 | |
| 4 | H | Q | -3.8215 | |
| 5 | K | Q | -4.2122 | |
| 6 | G | Q | -2.8997 | |
| 7 | H | Q | -3.4914 | |
| 1 | G | R | -3.9444 | |
| 2 | K | R | -4.8691 | |
| 3 | G | R | 0.0000 | |
| 4 | H | R | -4.5946 | |
| 5 | K | R | -4.8907 | |
| 6 | G | R | -3.7975 | |
| 7 | H | R | -3.0337 | |
| 1 | G | S | -2.6346 | |
| 2 | K | S | -3.8284 | |
| 3 | G | S | -3.5472 | |
| 4 | H | S | -4.6674 | |
| 5 | K | S | -4.2525 | |
| 6 | G | S | -4.2301 | |
| 7 | H | S | -3.6561 | |
| 1 | G | T | -2.7227 | |
| 2 | K | T | -3.2100 | |
| 3 | G | T | -3.5220 | |
| 4 | H | T | -3.9451 | |
| 5 | K | T | -4.8031 | |
| 6 | G | T | 0.0000 | |
| 7 | H | T | -5.5256 |