Project name: query_structure

Status: done

Started: 2026-03-16 20:44:44
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Chain sequence(s) K: RKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV
input PDB
Selected Chain(s) K
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with K chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:28)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:28)
Show buried residues

Minimal score value
-3.8167
Maximal score value
1.5013
Average score
-1.1064
Total score value
-129.4482

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
13 R K -3.1308
14 K K -3.0849
15 Q K -2.8086
16 V K -1.2944
17 S K -1.5499
18 D K -1.7584
19 G K 0.0000
20 V K 0.0000
21 A K 0.0000
22 H K -0.3794
23 I K 0.0000
24 H K -1.0927
25 A K 0.0000
26 S K -0.0357
27 F K 1.0507
28 N K -0.9621
29 N K -0.8550
30 T K -0.3875
31 I K 0.2379
32 V K 0.0000
33 T K 0.4481
34 I K 0.0000
35 T K 0.0000
36 D K 0.0000
37 R K -2.9181
38 Q K -2.7336
39 G K -2.1206
40 N K -2.1125
41 A K -0.8272
42 L K -0.1551
43 G K 0.0000
44 W K 1.0101
45 A K -0.0458
46 T K -0.1659
47 A K 0.0000
48 G K -1.1936
49 G K -0.8308
50 S K -0.9314
51 G K -1.0478
52 F K -1.4167
53 R K -2.6899
54 G K -2.0196
55 S K -1.4235
56 R K -1.6992
57 K K -1.5281
58 S K -0.7097
59 T K 0.0059
60 P K 0.1263
61 F K 1.5013
62 A K 0.0000
63 A K 0.0000
64 Q K -0.9497
65 V K 0.0000
66 A K 0.0000
67 A K 0.0000
68 E K -3.2040
69 R K -3.2389
70 C K 0.0000
71 A K 0.0000
72 D K -3.7241
73 A K -2.1739
74 V K 0.0000
75 K K -3.6980
76 E K -3.6198
77 Y K -2.9236
78 G K -2.7037
79 I K 0.0000
80 K K -2.8146
81 N K 0.0000
82 L K 0.0000
83 E K -1.7355
84 V K 0.0000
85 M K -0.7425
86 V K 0.0000
87 K K -1.5391
88 G K -0.7801
89 P K -0.5814
90 G K 0.0000
91 P K -0.3449
92 G K -0.5336
93 R K -1.9820
94 E K -2.0314
95 S K -1.3589
96 T K 0.0000
97 I K -1.6163
98 R K -2.6776
99 A K -1.8362
100 L K 0.0000
101 N K -2.6283
102 A K -1.5933
103 A K -2.0823
104 G K -1.7516
105 F K 0.0000
106 R K -2.9236
107 I K -2.0132
108 T K -1.5484
109 N K -1.3425
110 I K -0.2681
111 T K -0.8537
112 D K -1.5229
113 V K -0.2885
114 T K -0.3583
115 P K 0.3317
116 I K 1.3793
117 P K -0.2483
118 H K -1.3217
119 N K -1.9414
120 G K -1.3123
121 C K -1.0458
122 R K -2.2301
123 P K -1.9697
124 P K -2.2503
125 K K -3.6493
126 K K -3.8167
127 R K -3.5697
128 R K -2.5470
129 V K 0.2558
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Laboratory of Theory of Biopolymers 2018