Project name: query_structure

Status: done

Started: 2026-03-17 00:53:12
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Chain sequence(s) A: QVQLVESGGGLVQPGGSLTLSCTASGFTLDHYDIGWFRQAPGKEREGVSCINNSDDDTYYADSVKGRFTIFMNNAKDTVYLQMNSLKPEDTAIYYCAEARGCKRGEYEYDFWGQGTQVTVSSKKK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:17)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:17)
Show buried residues

Minimal score value
-3.5962
Maximal score value
0.596
Average score
-1.1231
Total score value
-140.3822

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.3343
2 V A -0.4605
3 Q A -0.7290
4 L A 0.0000
5 V A 0.5960
6 E A 0.0000
7 S A -0.4304
8 G A -0.5823
9 G A -0.6522
10 G A -0.3672
11 L A -0.6954
12 V A 0.0000
13 Q A -2.3558
14 P A -1.8727
15 G A -1.4231
16 G A -1.0453
17 S A -0.8813
18 L A -0.1734
19 T A -0.3466
20 L A 0.0000
21 S A 0.1105
22 C A 0.0000
23 T A -0.3262
24 A A 0.0000
25 S A -0.5486
26 G A -0.7806
27 F A -0.4257
28 T A -1.2210
29 L A 0.0000
30 D A -2.5721
31 H A -2.0566
32 Y A -1.1811
33 D A 0.0000
34 I A 0.0000
35 G A 0.0000
36 W A 0.0000
37 F A 0.0000
38 R A -1.1908
39 Q A -1.8407
40 A A -1.8790
41 P A -1.3492
42 G A -1.9100
43 K A -3.2508
44 E A -3.4030
45 R A -2.4617
46 E A -1.8007
47 G A -0.9304
48 V A 0.0000
49 S A 0.0000
50 C A 0.0000
51 I A 0.0000
52 N A -2.7155
53 N A -2.6074
54 S A -2.5408
55 D A -3.4988
56 D A -3.5962
57 D A -3.3211
58 T A -1.6106
59 Y A -1.2690
60 Y A -1.0381
61 A A 0.0000
62 D A -2.4420
63 S A -1.8526
64 V A 0.0000
65 K A -2.6043
66 G A -1.7815
67 R A -1.5146
68 F A 0.0000
69 T A -0.4391
70 I A 0.0000
71 F A 0.0475
72 M A -0.6306
73 N A -1.5130
74 N A -2.4981
75 A A -1.8505
76 K A -2.4298
77 D A -2.0745
78 T A 0.0000
79 V A 0.0000
80 Y A 0.2011
81 L A 0.0000
82 Q A -0.4579
83 M A 0.0000
84 N A -1.1658
85 S A -1.2400
86 L A 0.0000
87 K A -2.4164
88 P A -1.9447
89 E A -2.3421
90 D A 0.0000
91 T A -1.0305
92 A A 0.0000
93 I A -0.3659
94 Y A 0.0000
95 Y A -0.2264
96 C A 0.0000
97 A A 0.0000
98 E A 0.0000
99 A A 0.0000
100 R A -3.0194
101 G A -2.4310
102 C A -2.0447
103 K A -3.2137
104 R A -3.1526
105 G A -2.7471
106 E A -3.3320
107 Y A -2.5029
108 E A -2.8946
109 Y A 0.0000
110 D A -1.8967
111 F A -0.1588
112 W A 0.2176
113 G A -0.0424
114 Q A -0.8098
115 G A 0.0000
116 T A 0.0000
117 Q A -1.1066
118 V A 0.0000
119 T A -0.6892
120 V A 0.0000
121 S A -2.0132
122 S A -2.2641
123 K A -3.2331
124 K A -3.5155
125 K A -2.9920
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Laboratory of Theory of Biopolymers 2018