| Chain sequence(s) |
A: QVQLVESGGGLVQPGGSLTLSCTASGFTLDHYDIGWFRQAPGKEREGVSCINNSDDDTYYADSVKGRFTIFMNNAKDTVYLQMNSLKPEDTAIYYCAEARGCKRGEYEYDFWGQGTQVTVSSKKK
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:17)
[INFO] Main: Simulation completed successfully. (00:01:17)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.3343 | |
| 2 | V | A | -0.4605 | |
| 3 | Q | A | -0.7290 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.5960 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.4304 | |
| 8 | G | A | -0.5823 | |
| 9 | G | A | -0.6522 | |
| 10 | G | A | -0.3672 | |
| 11 | L | A | -0.6954 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -2.3558 | |
| 14 | P | A | -1.8727 | |
| 15 | G | A | -1.4231 | |
| 16 | G | A | -1.0453 | |
| 17 | S | A | -0.8813 | |
| 18 | L | A | -0.1734 | |
| 19 | T | A | -0.3466 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | 0.1105 | |
| 22 | C | A | 0.0000 | |
| 23 | T | A | -0.3262 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.5486 | |
| 26 | G | A | -0.7806 | |
| 27 | F | A | -0.4257 | |
| 28 | T | A | -1.2210 | |
| 29 | L | A | 0.0000 | |
| 30 | D | A | -2.5721 | |
| 31 | H | A | -2.0566 | |
| 32 | Y | A | -1.1811 | |
| 33 | D | A | 0.0000 | |
| 34 | I | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | 0.0000 | |
| 38 | R | A | -1.1908 | |
| 39 | Q | A | -1.8407 | |
| 40 | A | A | -1.8790 | |
| 41 | P | A | -1.3492 | |
| 42 | G | A | -1.9100 | |
| 43 | K | A | -3.2508 | |
| 44 | E | A | -3.4030 | |
| 45 | R | A | -2.4617 | |
| 46 | E | A | -1.8007 | |
| 47 | G | A | -0.9304 | |
| 48 | V | A | 0.0000 | |
| 49 | S | A | 0.0000 | |
| 50 | C | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | N | A | -2.7155 | |
| 53 | N | A | -2.6074 | |
| 54 | S | A | -2.5408 | |
| 55 | D | A | -3.4988 | |
| 56 | D | A | -3.5962 | |
| 57 | D | A | -3.3211 | |
| 58 | T | A | -1.6106 | |
| 59 | Y | A | -1.2690 | |
| 60 | Y | A | -1.0381 | |
| 61 | A | A | 0.0000 | |
| 62 | D | A | -2.4420 | |
| 63 | S | A | -1.8526 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.6043 | |
| 66 | G | A | -1.7815 | |
| 67 | R | A | -1.5146 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.4391 | |
| 70 | I | A | 0.0000 | |
| 71 | F | A | 0.0475 | |
| 72 | M | A | -0.6306 | |
| 73 | N | A | -1.5130 | |
| 74 | N | A | -2.4981 | |
| 75 | A | A | -1.8505 | |
| 76 | K | A | -2.4298 | |
| 77 | D | A | -2.0745 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | 0.2011 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -0.4579 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.1658 | |
| 85 | S | A | -1.2400 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.4164 | |
| 88 | P | A | -1.9447 | |
| 89 | E | A | -2.3421 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.0305 | |
| 92 | A | A | 0.0000 | |
| 93 | I | A | -0.3659 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.2264 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | E | A | 0.0000 | |
| 99 | A | A | 0.0000 | |
| 100 | R | A | -3.0194 | |
| 101 | G | A | -2.4310 | |
| 102 | C | A | -2.0447 | |
| 103 | K | A | -3.2137 | |
| 104 | R | A | -3.1526 | |
| 105 | G | A | -2.7471 | |
| 106 | E | A | -3.3320 | |
| 107 | Y | A | -2.5029 | |
| 108 | E | A | -2.8946 | |
| 109 | Y | A | 0.0000 | |
| 110 | D | A | -1.8967 | |
| 111 | F | A | -0.1588 | |
| 112 | W | A | 0.2176 | |
| 113 | G | A | -0.0424 | |
| 114 | Q | A | -0.8098 | |
| 115 | G | A | 0.0000 | |
| 116 | T | A | 0.0000 | |
| 117 | Q | A | -1.1066 | |
| 118 | V | A | 0.0000 | |
| 119 | T | A | -0.6892 | |
| 120 | V | A | 0.0000 | |
| 121 | S | A | -2.0132 | |
| 122 | S | A | -2.2641 | |
| 123 | K | A | -3.2331 | |
| 124 | K | A | -3.5155 | |
| 125 | K | A | -2.9920 |