Project name: obj1 [mutate: TW28C, IV93C]

Status: done

Started: 2025-02-10 08:52:53
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Chain sequence(s) C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYWGQGTLVTVSS
input PDB
Selected Chain(s) C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues IV93C,TW28C
Energy difference between WT (input) and mutated protein (by FoldX) -0.415469 kcal/mol
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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:22)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:24)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:44)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:45)
Show buried residues

Minimal score value
-3.3412
Maximal score value
2.127
Average score
-0.6398
Total score value
-76.772

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E C -2.0063
2 V C -0.7883
3 Q C -1.2443
4 L C 0.0000
5 V C 0.5664
6 E C 0.2237
7 S C -0.4099
8 G C -0.8151
9 G C -0.0263
10 G C 0.8946
11 L C 1.4396
12 V C -0.0390
13 Q C -1.3371
14 P C -1.4887
15 G C -1.4134
16 G C -0.9785
17 S C -1.2309
18 L C -0.9631
19 R C -2.1462
20 L C 0.0000
21 S C -0.5418
22 C C 0.0000
23 A C -0.2017
24 A C 0.0000
25 S C -0.0450
26 D C 0.0000
27 F C 2.1270
28 W C 1.4505 mutated: TW28C
29 F C 0.0000
30 R C -1.6715
31 S C -0.5227
32 Y C -1.0033
33 E C -1.1673
34 M C 0.0000
35 S C 0.0000
36 W C 0.0000
37 V C 0.0000
38 R C 0.0000
39 Q C -0.4964
40 A C -1.0997
41 P C -1.3542
42 G C -1.4544
43 K C -2.1702
44 G C -1.1158
45 L C 0.2622
46 E C -0.4442
47 W C 0.3162
48 V C 0.0000
49 S C 0.0000
50 A C 0.0000
51 I C 0.0000
52 S C -0.5924
53 G C -1.1287
54 S C -1.2345
55 G C -1.0817
56 G C -0.7345
57 S C -0.3025
58 T C 0.1989
59 Y C 0.6077
60 Y C -0.3559
61 A C -1.1386
62 D C -2.3443
63 S C -1.7150
64 V C 0.0000
65 K C -2.3847
66 G C -1.6175
67 R C 0.0000
68 F C 0.0000
69 T C -0.6722
70 I C 0.0000
71 S C -0.5624
72 R C -1.3626
73 D C -1.9805
74 N C -2.0538
75 S C -1.7905
76 K C -2.3163
77 N C -1.5029
78 T C 0.0000
79 L C 0.0000
80 Y C -0.6696
81 L C 0.0000
82 Q C -1.2337
83 M C 0.0000
84 N C -1.3327
85 S C -1.2322
86 L C 0.0000
87 R C -2.4722
88 A C -1.8896
89 E C -2.3446
90 D C 0.0000
91 T C -0.4887
92 A C 0.0000
93 V C 0.7681 mutated: IV93C
94 Y C 0.0000
95 Y C 0.5675
96 C C 0.0000
97 A C 0.0000
98 R C 0.0000
99 L C 0.0000
100 R C -3.1992
101 D C -3.3412
102 G C -2.0930
103 F C -1.2310
104 N C -2.4286
105 K C -3.1848
106 G C -1.9076
107 F C -0.9859
108 D C -1.0994
109 Y C -0.2104
110 W C 0.5589
111 G C -0.0666
112 Q C -0.9084
113 G C 0.0224
114 T C 0.4933
115 L C 1.6368
116 V C 0.0000
117 T C 0.2951
118 V C 0.0000
119 S C -0.7746
120 S C -1.0601
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Laboratory of Theory of Biopolymers 2018