Project name: 6OBD

Status: done

Started: 2026-03-29 09:51:49
Settings
Chain sequence(s) H: EVQLVESGGGLVQPGGSLRLSCAASGFPFSNYWMNWVRQAPGKGLEWVGQIRLKSNNYATHYAESVKGRFTISRDDSKNSLYLQMNSLKTEDTAVYYCTPIDYWGQGTTVTVSS
L: DIVMTQTPLSLSVTPGQPASISCKSSQSLLYSNGKTYLNWVLQKPGQSPQRLIYLVSKLDSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCVQGSHFHTFGQGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:46)
Show buried residues

Minimal score value
-2.7071
Maximal score value
1.2562
Average score
-0.6281
Total score value
-141.3257

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.8806
2 V H -0.7856
3 Q H -0.6874
4 L H 0.0000
5 V H 1.2562
6 E H 0.0000
7 S H -0.3647
8 G H -0.9411
9 G H -0.4039
11 G H 0.3572
12 L H 1.1032
13 V H 0.0000
14 Q H -1.3688
15 P H -1.5617
16 G H -1.3565
17 G H 0.0000
18 S H -1.1799
19 L H -0.9140
20 R H -1.8487
21 L H 0.0000
22 S H -0.2748
23 C H 0.0000
24 A H -0.0223
25 A H 0.0000
26 S H -0.7987
27 G H -1.0750
28 F H -0.5483
29 P H -0.6751
30 F H 0.0000
35 S H -1.4994
36 N H -1.4515
37 Y H -0.1884
38 W H 0.0053
39 M H 0.0000
40 N H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.7931
45 A H -1.2054
46 P H -1.1655
47 G H -1.4583
48 K H -2.3488
49 G H -1.5387
50 L H 0.0000
51 E H -1.0321
52 W H 0.0000
53 V H 0.0000
54 G H 0.0000
55 Q H 0.0000
56 I H 0.0000
57 R H -0.8668
58 L H -1.4197
59 K H -2.5188
60 S H -1.7752
61 N H -1.6990
62 N H -2.0560
63 Y H -1.1043
64 A H -0.7428
65 T H -0.1568
66 H H -0.4291
67 Y H -0.9037
68 A H -1.5680
69 E H -2.7071
70 S H -1.8000
71 V H 0.0000
72 K H -2.6245
74 G H -1.7367
75 R H -1.6132
76 F H 0.0000
77 T H -0.8663
78 I H 0.0000
79 S H -0.2999
80 R H -1.0337
81 D H -1.5496
82 D H -2.0130
83 S H -1.5788
84 K H -2.4003
85 N H -1.8282
86 S H -0.9953
87 L H 0.0000
88 Y H -0.4202
89 L H 0.0000
90 Q H -1.1795
91 M H 0.0000
92 N H -1.3480
93 S H -1.1588
94 L H 0.0000
95 K H -2.2665
96 T H -1.8069
97 E H -2.2948
98 D H 0.0000
99 T H -0.7051
100 A H 0.0000
101 V H 0.1496
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 T H 0.0000
106 P H 0.0000
107 I H 0.0000
116 D H -0.1741
117 Y H 0.1516
118 W H -0.0619
119 G H 0.0000
120 Q H -1.0748
121 G H -0.3948
122 T H -0.1644
123 T H -0.0023
124 V H 0.0000
125 T H -0.0765
126 V H 0.0000
127 S H -0.7420
128 S H -0.5085
1 D L -1.7709
2 I L 0.0000
3 V L 0.7567
4 M L 0.0000
5 T L -0.4411
6 Q L 0.0000
7 T L 0.0372
8 P L 0.3559
9 L L 1.0806
10 S L 0.0796
11 L L -0.2005
12 S L -0.9442
13 V L 0.0000
14 T L -1.5400
15 P L -1.5234
16 G L -1.6239
17 Q L -1.8766
18 P L -1.5738
19 A L 0.0000
20 S L -0.7241
21 I L 0.0000
22 S L -0.8218
23 C L 0.0000
24 K L -1.6215
25 S L 0.0000
26 S L -0.8362
27 Q L -1.4889
28 S L -0.6855
29 L L 0.0000
30 L L 0.8463
31 Y L 0.2098
32 S L -0.5763
34 N L -1.5109
35 G L -1.0834
36 K L -0.9259
37 T L 0.1591
38 Y L 0.5229
39 L L 0.0000
40 N L 0.0000
41 W L 0.0000
42 V L 0.0000
43 L L 0.0000
44 Q L -1.0892
45 K L -1.6518
46 P L -1.0436
47 G L -1.3571
48 Q L -2.1120
49 S L -1.4491
50 P L 0.0000
51 Q L -1.2969
52 R L -0.5203
53 L L 0.0000
54 I L 0.0000
55 Y L 0.1882
56 L L 0.0702
57 V L 0.0000
65 S L -0.5033
66 K L -0.8040
67 L L -0.4023
68 D L -0.5067
69 S L -0.5077
70 G L -0.6694
71 V L -0.5841
72 P L -0.9734
74 D L -1.9297
75 R L 0.0000
76 F L 0.0000
77 S L -1.1285
78 G L -0.6863
79 S L -0.9374
80 G L -1.0647
83 S L -0.6834
84 G L -0.4826
85 T L -1.2825
86 D L -1.9842
87 F L 0.0000
88 T L -0.9982
89 L L 0.0000
90 K L -1.6003
91 I L 0.0000
92 S L -1.7200
93 R L -2.1938
94 V L 0.0000
95 E L -1.5636
96 A L -1.3393
97 E L -1.8861
98 D L 0.0000
99 V L -0.8592
100 G L 0.0000
101 V L -0.2127
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 V L 0.0000
106 Q L 0.0000
107 G L 0.1653
108 S L 0.0000
114 H L -0.6897
115 F L -0.0133
116 H L 0.0000
117 T L -0.0787
118 F L 0.0000
119 G L 0.0000
120 Q L -0.9085
121 G L 0.0000
122 T L 0.0000
123 K L -0.6759
124 L L 0.0000
125 E L -1.5154
126 I L -1.2380
127 K L -1.8746
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Laboratory of Theory of Biopolymers 2018