Project name: 559

Status: done

Started: 2025-06-25 13:29:56
Settings
Chain sequence(s) H: EVQLLESGGGLVQPGGSLRLSCTASGYTNRLKCMGWFRQAPGKEREEIASISTGTGNTYYADSVKGRFTISRDKSRNTLYLQMNTLRAEDTAVYYCAADVRPHGTTCHYNSRGQGTQVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:56)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:56)
Show buried residues

Minimal score value
-3.0979
Maximal score value
1.1358
Average score
-0.8756
Total score value
-106.8172

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.9336
2 V H -1.4493
3 Q H -1.6248
4 L H 0.0000
5 L H 0.5969
6 E H 0.0000
7 S H -0.3961
8 G H -0.8211
9 G H -0.4642
11 G H 0.1666
12 L H 1.1358
13 V H 0.0098
14 Q H -1.3266
15 P H -1.7270
16 G H -1.3221
17 G H -0.9174
18 S H -0.9816
19 L H -0.4148
20 R H -1.2213
21 L H 0.0000
22 S H -0.3242
23 C H 0.0000
24 T H -0.4056
25 A H 0.0000
26 S H -0.5377
27 G H -0.7716
28 Y H -0.2663
29 T H -0.5855
30 N H -1.4530
35 R H -1.2818
36 L H -1.0097
37 K H -1.7337
38 C H -0.8086
39 M H 0.0000
40 G H 0.0000
41 W H 0.0000
42 F H -1.1780
43 R H 0.0000
44 Q H -1.5862
45 A H -1.4309
46 P H -1.0265
47 G H -1.4848
48 K H -2.2438
49 E H -2.9649
50 R H -2.2810
51 E H -2.0954
52 E H -2.2035
53 I H 0.0000
54 A H 0.0000
55 S H 0.0252
56 I H 0.0000
57 S H -0.8319
58 T H -1.1527
59 G H -1.0361
62 T H -0.9492
63 G H -1.1441
64 N H -1.2084
65 T H -0.0336
66 Y H 0.6971
67 Y H -0.4660
68 A H -1.4157
69 D H -2.2924
70 S H -1.8639
71 V H 0.0000
72 K H -2.3565
74 G H -1.6712
75 R H -1.4601
76 F H 0.0000
77 T H -0.5254
78 I H 0.0000
79 S H -0.9140
80 R H -1.9986
81 D H -2.5753
82 K H -3.0580
83 S H -2.4005
84 R H -3.0979
85 N H -2.6083
86 T H 0.0000
87 L H 0.0000
88 Y H -0.6179
89 L H 0.0000
90 Q H -0.7796
91 M H 0.0000
92 N H -1.1063
93 T H -1.0894
94 L H 0.0000
95 R H -2.1209
96 A H -1.6260
97 E H -2.1683
98 D H 0.0000
99 T H -0.6616
100 A H 0.0000
101 V H -0.1152
102 Y H 0.0000
103 Y H -0.6471
104 C H 0.0000
105 A H 0.0000
106 A H 0.0000
107 D H 0.0000
108 V H -0.9945
109 R H -1.7957
110 P H -1.4026
111 H H -1.5553
111A G H -1.2161
112A T H -1.0869
112 T H -0.7051
113 C H -0.7845
114 H H -1.2212
115 Y H -1.0742
116 N H -1.6165
117 S H -1.6905
118 R H -2.1631
119 G H 0.0000
120 Q H -1.3320
121 G H -0.6572
122 T H -0.4480
123 Q H -0.4900
124 V H 0.0000
125 T H -0.1003
126 V H 0.0000
127 S H -0.4011
128 S H -0.4491
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Laboratory of Theory of Biopolymers 2018