| Chain sequence(s) |
H: QVQLVESGGGVVQPGESLKISCAASGFTFSSYAMHWVRQAPGKGLEWVSAISGSGGTAFYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARSTYYYGASGYDYYFSPWGPGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRASQHIRSSLAWYQQKPGKAPKLLIYGASSRATGIPDRFSGSGSGTDFTLTISSLQPEDFATYYCQHTYITPYTFGQGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:01)
[INFO] Main: Simulation completed successfully. (00:00:03)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 0 | Q | H | -1.3171 | |
| 1 | V | H | -0.6519 | |
| 2 | Q | H | -0.7387 | |
| 3 | L | H | 0.0000 | |
| 4 | V | H | 1.4211 | |
| 5 | E | H | 0.0000 | |
| 6 | S | H | -0.1185 | |
| 7 | G | H | -0.7714 | |
| 8 | G | H | 0.1410 | |
| 9 | G | H | 0.9276 | |
| 10 | V | H | 1.5562 | |
| 11 | V | H | 0.0000 | |
| 12 | Q | H | -1.7790 | |
| 13 | P | H | -1.8992 | |
| 14 | G | H | -2.0390 | |
| 15 | E | H | -2.1846 | |
| 16 | S | H | -1.5903 | |
| 17 | L | H | -0.9949 | |
| 18 | K | H | -1.9377 | |
| 19 | I | H | 0.0000 | |
| 20 | S | H | -0.3142 | |
| 21 | C | H | 0.0000 | |
| 22 | A | H | 0.0446 | |
| 23 | A | H | -0.3546 | |
| 24 | S | H | -0.5464 | |
| 25 | G | H | -0.8642 | |
| 26 | F | H | -0.3051 | |
| 27 | T | H | -0.1939 | |
| 28 | F | H | 0.0000 | |
| 29 | S | H | -0.6606 | |
| 30 | S | H | -0.0891 | |
| 31 | Y | H | 0.2538 | |
| 32 | A | H | 0.1297 | |
| 33 | M | H | 0.0000 | |
| 34 | H | H | 0.0000 | |
| 35 | W | H | 0.0000 | |
| 36 | V | H | 0.0000 | |
| 37 | R | H | 0.0000 | |
| 38 | Q | H | -0.7219 | |
| 39 | A | H | -1.0431 | |
| 40 | P | H | -0.9822 | |
| 41 | G | H | -1.5043 | |
| 42 | K | H | -2.3898 | |
| 43 | G | H | -1.6295 | |
| 44 | L | H | 0.0000 | |
| 45 | E | H | -1.2678 | |
| 46 | W | H | 0.0000 | |
| 47 | V | H | 0.0000 | |
| 48 | S | H | 0.0000 | |
| 49 | A | H | 0.0000 | |
| 50 | I | H | 0.0000 | |
| 51 | S | H | -0.2015 | |
| 52 | G | H | -0.4879 | |
| 53 | S | H | -0.7317 | |
| 54 | G | H | -0.8329 | |
| 55 | G | H | -0.7209 | |
| 56 | T | H | -0.0847 | |
| 57 | A | H | 0.6051 | |
| 58 | F | H | 1.2068 | |
| 59 | Y | H | -0.0526 | |
| 60 | A | H | -1.0505 | |
| 61 | D | H | -2.2759 | |
| 62 | S | H | -1.7122 | |
| 63 | V | H | 0.0000 | |
| 64 | K | H | -2.3433 | |
| 65 | G | H | -1.6973 | |
| 66 | R | H | -1.2503 | |
| 67 | F | H | 0.0000 | |
| 68 | T | H | -0.5923 | |
| 69 | I | H | 0.0000 | |
| 70 | S | H | -0.4560 | |
| 71 | R | H | -1.0905 | |
| 72 | D | H | -1.6526 | |
| 73 | N | H | -1.8071 | |
| 74 | S | H | -1.6309 | |
| 75 | K | H | -2.4213 | |
| 76 | N | H | -1.8642 | |
| 77 | T | H | -0.9999 | |
| 78 | L | H | 0.0000 | |
| 79 | Y | H | -0.4605 | |
| 80 | L | H | 0.0000 | |
| 81 | Q | H | -1.1220 | |
| 82 | M | H | 0.0000 | |
| 83 | N | H | -1.7072 | |
| 84 | S | H | -1.6408 | |
| 85 | L | H | 0.0000 | |
| 86 | R | H | -2.7636 | |
| 87 | A | H | -1.9131 | |
| 88 | E | H | -2.3112 | |
| 89 | D | H | 0.0000 | |
| 90 | T | H | -0.4299 | |
| 91 | A | H | 0.0000 | |
| 92 | V | H | 0.8941 | |
| 93 | Y | H | 0.0000 | |
| 94 | Y | H | 0.0000 | |
| 95 | C | H | 0.0000 | |
| 96 | A | H | 0.0000 | |
| 97 | R | H | 0.0061 | |
| 98 | S | H | 0.0000 | |
| 99 | T | H | 0.9636 | |
| 100 | Y | H | 2.0691 | |
| 101 | Y | H | 1.7545 | |
| 102 | Y | H | 1.6218 | |
| 103 | G | H | 0.3317 | |
| 104 | A | H | -0.0173 | |
| 105 | S | H | 0.0448 | |
| 106 | G | H | 0.1844 | |
| 107 | Y | H | 1.5493 | |
| 108 | D | H | 1.2265 | |
| 109 | Y | H | 1.4795 | |
| 110 | Y | H | 0.7297 | |
| 111 | F | H | 0.0000 | |
| 112 | S | H | -0.2097 | |
| 113 | P | H | -0.4865 | |
| 114 | W | H | -0.3698 | |
| 115 | G | H | 0.0000 | |
| 116 | P | H | -0.3526 | |
| 117 | G | H | 0.1878 | |
| 118 | T | H | 0.7485 | |
| 119 | L | H | 1.7363 | |
| 120 | V | H | 0.0000 | |
| 121 | T | H | 0.3735 | |
| 122 | V | H | 0.0000 | |
| 123 | S | H | -0.6648 | |
| 124 | S | H | -0.5992 | |
| 125 | D | L | -2.0085 | |
| 126 | I | L | 0.0000 | |
| 127 | Q | L | -2.1914 | |
| 128 | M | L | 0.0000 | |
| 129 | T | L | -1.2806 | |
| 130 | Q | L | 0.0000 | |
| 131 | S | L | -0.7307 | |
| 132 | P | L | -0.5971 | |
| 133 | S | L | -0.9601 | |
| 134 | S | L | -1.1304 | |
| 135 | L | L | -0.6503 | |
| 136 | S | L | -0.7030 | |
| 137 | A | L | 0.0000 | |
| 138 | S | L | -0.1482 | |
| 139 | V | L | 0.7174 | |
| 140 | G | L | -0.7083 | |
| 141 | D | L | -1.6690 | |
| 142 | R | L | -2.3430 | |
| 143 | V | L | 0.0000 | |
| 144 | T | L | -0.6349 | |
| 145 | I | L | 0.0000 | |
| 146 | T | L | -0.9700 | |
| 147 | C | L | 0.0000 | |
| 148 | R | L | -3.0417 | |
| 149 | A | L | 0.0000 | |
| 150 | S | L | -2.2538 | |
| 151 | Q | L | -2.8562 | |
| 152 | H | L | -2.5738 | |
| 153 | I | L | 0.0000 | |
| 154 | R | L | -2.6057 | |
| 155 | S | L | -1.4913 | |
| 156 | S | L | -0.4202 | |
| 157 | L | L | 0.0000 | |
| 158 | A | L | 0.0000 | |
| 159 | W | L | 0.0000 | |
| 160 | Y | L | 0.0000 | |
| 161 | Q | L | -1.0686 | |
| 162 | Q | L | -1.6989 | |
| 163 | K | L | -2.2407 | |
| 164 | P | L | -1.4935 | |
| 165 | G | L | -1.6712 | |
| 166 | K | L | -2.5856 | |
| 167 | A | L | -1.5801 | |
| 168 | P | L | 0.0000 | |
| 169 | K | L | -2.0376 | |
| 170 | L | L | -0.8143 | |
| 171 | L | L | 0.0000 | |
| 172 | I | L | 0.0000 | |
| 173 | Y | L | -0.2509 | |
| 174 | G | L | -0.8718 | |
| 175 | A | L | 0.0000 | |
| 176 | S | L | -0.8030 | |
| 177 | S | L | -0.8477 | |
| 178 | R | L | -1.6643 | |
| 179 | A | L | -0.8879 | |
| 180 | T | L | -0.5860 | |
| 181 | G | L | -0.9197 | |
| 182 | I | L | 0.0000 | |
| 183 | P | L | -1.3875 | |
| 184 | D | L | -2.3085 | |
| 185 | R | L | -1.6208 | |
| 186 | F | L | 0.0000 | |
| 187 | S | L | -1.0308 | |
| 188 | G | L | -0.5989 | |
| 189 | S | L | -0.8376 | |
| 190 | G | L | -1.4411 | |
| 191 | S | L | -1.8379 | |
| 192 | G | L | -2.4356 | |
| 193 | T | L | -2.6661 | |
| 194 | D | L | -3.1599 | |
| 195 | F | L | 0.0000 | |
| 196 | T | L | -0.9089 | |
| 197 | L | L | 0.0000 | |
| 198 | T | L | -0.6143 | |
| 199 | I | L | 0.0000 | |
| 200 | S | L | -1.6836 | |
| 201 | S | L | -1.2906 | |
| 202 | L | L | 0.0000 | |
| 203 | Q | L | -0.7795 | |
| 204 | P | L | -0.6490 | |
| 205 | E | L | -1.8867 | |
| 206 | D | L | 0.0000 | |
| 207 | F | L | -0.5784 | |
| 208 | A | L | 0.0000 | |
| 209 | T | L | -1.2819 | |
| 210 | Y | L | 0.0000 | |
| 211 | Y | L | 0.0000 | |
| 212 | C | L | 0.0000 | |
| 213 | Q | L | 0.0000 | |
| 214 | H | L | 0.0000 | |
| 215 | T | L | 1.2239 | |
| 216 | Y | L | 1.5298 | |
| 217 | I | L | 2.0402 | |
| 218 | T | L | 0.8537 | |
| 219 | P | L | -0.0319 | |
| 220 | Y | L | 0.0000 | |
| 221 | T | L | -0.4743 | |
| 222 | F | L | -0.4872 | |
| 223 | G | L | 0.0000 | |
| 224 | Q | L | -1.5932 | |
| 225 | G | L | 0.0000 | |
| 226 | T | L | 0.0000 | |
| 227 | K | L | -2.1476 | |
| 228 | V | L | 0.0000 | |
| 229 | E | L | -0.9077 | |
| 230 | I | L | 0.9388 | |
| 231 | K | L | -0.7862 |