Project name: 86d13d30156232

Status: done

Started: 2025-06-03 05:03:37
Settings
Chain sequence(s) H: EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYNMNWVRQAPGKGLEWVSYISSSSSTIYYADSVKGRFTISRDNAKNSLSLQMNSLRDEDTAVYYCARAYYYGMDVWGQGTTVTVSS
L: DIQMTQSPSSVSASVGDRVTITCRASQGISGWLAWYQQKPGKAPKFLIYAASTLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQANSFPPTFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:39)
Show buried residues

Minimal score value
-3.6502
Maximal score value
1.8912
Average score
-0.5303
Total score value
-118.7953

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.0231
2 V H -1.0410
3 Q H -1.0930
4 L H 0.0000
5 V H 1.0080
6 E H 0.0000
7 S H -0.3896
8 G H -0.8289
9 G H -0.2908
11 G H 0.2967
12 L H 1.1876
13 V H -0.2492
14 Q H -1.6169
15 P H -2.1277
16 G H -1.7109
17 G H -1.2015
18 S H -0.9787
19 L H -0.6753
20 R H -1.5333
21 L H 0.0000
22 S H -0.3724
23 C H 0.0000
24 A H -0.1868
25 A H 0.0000
26 S H -0.8126
27 G H -1.2027
28 F H -0.4975
29 T H -0.2502
30 F H 0.0000
35 S H -0.8708
36 S H -0.3339
37 Y H 0.0184
38 N H -0.1802
39 M H 0.0000
40 N H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.7760
45 A H -1.1884
46 P H -0.9695
47 G H -1.4559
48 K H -2.2788
49 G H -1.4542
50 L H 0.0000
51 E H -0.9747
52 W H 0.0000
53 V H 0.0000
54 S H 0.0000
55 Y H 0.7220
56 I H 0.0000
57 S H -0.1051
58 S H -0.5809
59 S H -0.5477
62 S H -0.4006
63 S H -0.1711
64 T H 0.3121
65 I H 1.0793
66 Y H 1.0123
67 Y H -0.1768
68 A H -1.0308
69 D H -2.3518
70 S H -1.6935
71 V H 0.0000
72 K H -2.3437
74 G H -1.6369
75 R H -1.3497
76 F H 0.0000
77 T H -0.5170
78 I H 0.0000
79 S H -0.3080
80 R H -1.1526
81 D H -1.6993
82 N H -1.7222
83 A H -1.4265
84 K H -2.3534
85 N H -1.8636
86 S H -1.1684
87 L H 0.0000
88 S H -0.6327
89 L H 0.0000
90 Q H -0.9019
91 M H 0.0000
92 N H -1.2759
93 S H -1.3164
94 L H 0.0000
95 R H -3.4227
96 D H -3.6502
97 E H -3.2056
98 D H 0.0000
99 T H -1.1846
100 A H 0.0000
101 V H 0.2244
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 A H 0.5786
108 Y H 1.0779
109 Y H 1.8912
113 Y H 1.6178
114 G H 0.0000
115 M H 0.0000
116 D H 0.1440
117 V H -0.1403
118 W H -0.3309
119 G H 0.0000
120 Q H -1.3106
121 G H -0.5684
122 T H -0.1425
123 T H 0.0399
124 V H 0.0000
125 T H -0.3680
126 V H 0.0000
127 S H -1.0523
128 S H -0.7781
1 D L -2.0481
2 I L 0.0000
3 Q L -2.2832
4 M L 0.0000
5 T L -1.4184
6 Q L -1.0690
7 S L -0.7263
8 P L -0.6388
9 S L -0.8386
10 S L -0.9626
11 V L -0.4831
12 S L -0.6116
13 A L 0.0000
14 S L 0.0643
15 V L 0.9198
16 G L -0.3361
17 D L -1.1767
18 R L -2.0536
19 V L 0.0000
20 T L -0.5919
21 I L 0.0000
22 T L -0.8557
23 C L 0.0000
24 R L -2.8230
25 A L 0.0000
26 S L -2.0406
27 Q L -2.1728
28 G L -1.4756
29 I L 0.0000
36 S L -0.7132
37 G L -0.3034
38 W L 0.4588
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.8693
46 P L -1.2818
47 G L -1.7220
48 K L -2.6178
49 A L -1.5805
50 P L 0.0000
51 K L -1.2706
52 F L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.7175
56 A L 0.4538
57 A L 0.0000
65 S L -0.2088
66 T L 0.1009
67 L L 0.2920
68 Q L -0.2498
69 S L -0.4073
70 G L -0.5732
71 V L 0.0000
72 P L -0.3988
74 S L -0.4142
75 R L -0.7726
76 F L 0.0000
77 S L -0.3306
78 G L -0.2667
79 S L -0.6604
80 G L -1.0708
83 S L -1.0221
84 G L -1.2352
85 T L -1.7924
86 D L -2.1407
87 F L 0.0000
88 T L -0.7544
89 L L 0.0000
90 T L -0.6153
91 I L 0.0000
92 S L -1.2108
93 S L -0.9223
94 L L 0.0000
95 Q L -0.6109
96 P L -0.5693
97 E L -1.6930
98 D L 0.0000
99 F L -0.3967
100 A L 0.0000
101 T L -0.9742
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 A L 0.6111
108 N L -0.0683
109 S L 0.1551
114 F L 0.9336
115 P L 0.0621
116 P L 0.0000
117 T L -0.6595
118 F L 0.0000
119 G L 0.0000
120 G L -1.2903
121 G L -1.0192
122 T L 0.0000
123 K L -1.7936
124 V L 0.0000
125 E L -0.6108
126 I L 1.0738
127 K L -0.7066
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018