Project name: KLD-12_2

Status: done

Started: 2026-06-25 01:44:23
Settings
Chain sequence(s) A: KLDLKLDLKLDL
B: KLDLKLDLKLDL
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:55)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:56)
Show buried residues

Minimal score value
-2.1155
Maximal score value
0.6791
Average score
-1.0597
Total score value
-25.4331

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.8895
2 L A -1.5489
3 D A -1.9661
4 L A -0.6481
5 K A -2.1155
6 L A -1.6286
7 D A -1.6392
8 L A -0.3830
9 K A -1.1050
10 L A -0.0475
11 D A -1.0005
12 L A 0.6791
1 K B -1.7696
2 L B -1.5419
3 D B -1.8965
4 L B -0.3897
5 K B -1.5179
6 L B -1.4046
7 D B -1.5576
8 L B -0.4537
9 K B -1.0919
10 L B -0.0624
11 D B -1.0470
12 L B 0.5925
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Laboratory of Theory of Biopolymers 2018