| Chain sequence(s) |
A: KLDLKLDLKLDL
B: KLDLKLDLKLDL input PDB |
| Selected Chain(s) | A,B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:55)
[INFO] Main: Simulation completed successfully. (00:00:56)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -1.8895 | |
| 2 | L | A | -1.5489 | |
| 3 | D | A | -1.9661 | |
| 4 | L | A | -0.6481 | |
| 5 | K | A | -2.1155 | |
| 6 | L | A | -1.6286 | |
| 7 | D | A | -1.6392 | |
| 8 | L | A | -0.3830 | |
| 9 | K | A | -1.1050 | |
| 10 | L | A | -0.0475 | |
| 11 | D | A | -1.0005 | |
| 12 | L | A | 0.6791 | |
| 1 | K | B | -1.7696 | |
| 2 | L | B | -1.5419 | |
| 3 | D | B | -1.8965 | |
| 4 | L | B | -0.3897 | |
| 5 | K | B | -1.5179 | |
| 6 | L | B | -1.4046 | |
| 7 | D | B | -1.5576 | |
| 8 | L | B | -0.4537 | |
| 9 | K | B | -1.0919 | |
| 10 | L | B | -0.0624 | |
| 11 | D | B | -1.0470 | |
| 12 | L | B | 0.5925 |