Project name: MEF

Status: done

Started: 2025-12-20 12:24:41
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Chain sequence(s) A: APKTYCEELKGTDTGQGGGGSATSSTPREAPYEGGGGSKQTGQQVSIAPNAGLDPVNGGGGSAPKTYCEELKGTDTGQGGGGSATSSTPREAPYEGGGGSDNAAVDASSGVEAAAG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:41)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:42)
Show buried residues

Minimal score value
-2.9141
Maximal score value
2.0237
Average score
-1.0561
Total score value
-122.5099

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -0.5077
2 P A -0.9036
3 K A -1.3952
4 T A -0.3461
5 Y A 0.3756
6 C A -0.0489
7 E A -1.7924
8 E A -2.1248
9 L A -0.6684
10 K A -2.2768
11 G A -1.7295
12 T A -1.4929
13 D A -2.6021
14 T A -1.6686
15 G A -1.9209
16 Q A -2.0925
17 G A -1.6450
18 G A -1.4482
19 G A -1.2021
20 G A -0.8935
21 S A -0.6313
22 A A -0.3612
23 T A -0.3148
24 S A -0.4075
25 S A -0.6732
26 T A -0.9905
27 P A -1.6576
28 R A -2.9141
29 E A -2.6685
30 A A -1.1826
31 P A -0.5477
32 Y A -0.1108
33 E A -1.6472
34 G A -1.3318
35 G A -1.3852
36 G A -1.5432
37 G A -1.5958
38 S A -1.8042
39 K A -2.6931
40 Q A -2.6178
41 T A -1.9238
42 G A -1.6876
43 Q A -1.6925
44 Q A -1.0113
45 V A 1.2134
46 S A 1.1217
47 I A 2.0237
48 A A 0.6684
49 P A -0.3718
50 N A -1.1929
51 A A -0.7375
52 G A -0.4443
53 L A 0.4223
54 D A -1.0947
55 P A -0.4140
56 V A 0.4972
57 N A -1.0411
58 G A -1.1698
59 G A -1.1680
60 G A -1.2241
61 G A -1.0025
62 S A -0.8080
63 A A -0.8595
64 P A -1.0017
65 K A -1.3984
66 T A -0.3586
67 Y A 0.2921
68 C A 0.0116
69 E A -1.7657
70 E A -2.1396
71 L A -0.6983
72 K A -2.3036
73 G A -1.6802
74 T A -1.4849
75 D A -2.5498
76 T A -1.6751
77 G A -1.8430
78 Q A -2.0974
79 G A -1.6054
80 G A -1.5093
81 G A -1.2271
82 G A -0.9039
83 S A -0.6348
84 A A -0.3667
85 T A -0.3536
86 S A -0.4207
87 S A -0.7589
88 T A -1.1791
89 P A -1.8090
90 R A -2.9097
91 E A -2.5674
92 A A -1.4399
93 P A -1.0405
94 Y A -0.2550
95 E A -1.6337
96 G A -1.3696
97 G A -1.2543
98 G A -1.2792
99 G A -1.4807
100 S A -1.7590
101 D A -2.6054
102 N A -1.9757
103 A A -0.8051
104 A A 0.1830
105 V A 0.7446
106 D A -0.9219
107 A A -0.5089
108 S A -0.4509
109 S A -0.4946
110 G A -0.2041
111 V A 0.5893
112 E A -1.0630
113 A A -0.4130
114 A A -0.2103
115 A A -0.1412
116 G A -0.4242
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Laboratory of Theory of Biopolymers 2018