Project name: query_structure

Status: done

Started: 2026-03-16 23:12:21
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Chain sequence(s) A: EVQLQASGGGLVEPGGSLRLSCAVSGINFNINHWGWYRQAPGKQREWVATIAIGGATDYADSLKGRFTISRDNMKNTVYLQMSSLRPEDTAVFYCNGVGSKWSDRWGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:58)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:59)
Show buried residues

Minimal score value
-3.1569
Maximal score value
0.7859
Average score
-0.9157
Total score value
-105.3074

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E A -1.6460
2 V A -0.8644
3 Q A -1.3662
4 L A 0.0000
5 Q A -1.4624
6 A A -1.0845
7 S A -1.1958
8 G A -1.0050
9 G A -0.8098
10 G A -0.0307
11 L A 0.7859
12 V A 0.0000
13 E A -2.1718
14 P A -2.1886
15 G A -1.7271
16 G A -1.2032
17 S A -1.4054
18 L A -0.9697
19 R A -2.2418
20 L A 0.0000
21 S A -0.8568
22 C A 0.0000
23 A A -0.8975
24 V A -0.7498
25 S A -0.6885
26 G A -0.3194
27 I A 0.7375
28 N A -0.5721
29 F A -0.6575
30 N A -1.4359
31 I A 0.0000
32 N A -0.5760
33 H A -0.5795
34 W A 0.0000
35 G A 0.0000
36 W A 0.0000
37 Y A -0.4577
38 R A -1.3563
39 Q A -2.0770
40 A A -2.0115
41 P A -1.4968
42 G A -1.8116
43 K A -3.1469
44 Q A -3.0337
45 R A -2.5730
46 E A -2.4923
47 W A -0.9463
48 V A 0.0000
49 A A 0.0000
50 T A -0.6320
51 I A 0.0000
52 A A -0.0148
53 I A 0.5744
54 G A -0.1221
55 G A -0.5056
56 A A -0.3572
57 T A -0.7924
58 D A -1.9701
59 Y A -1.6810
60 A A -1.8237
61 D A -2.6321
62 S A -1.6786
63 L A 0.0000
64 K A -2.8840
65 G A -1.7812
66 R A -1.4200
67 F A 0.0000
68 T A -1.1943
69 I A 0.0000
70 S A -0.6127
71 R A -0.8620
72 D A -1.2147
73 N A -1.6649
74 M A -0.6520
75 K A -1.8474
76 N A -1.8016
77 T A 0.0000
78 V A 0.0000
79 Y A -0.6821
80 L A 0.0000
81 Q A -1.6257
82 M A 0.0000
83 S A -1.2294
84 S A -1.3460
85 L A 0.0000
86 R A -3.1569
87 P A -2.4006
88 E A -2.6142
89 D A 0.0000
90 T A -1.0944
91 A A 0.0000
92 V A -0.4597
93 F A 0.0000
94 Y A -0.5394
95 C A 0.0000
96 N A 0.0000
97 G A 0.0000
98 V A -0.9634
99 G A 0.0000
100 S A -1.2293
101 K A -1.4253
102 W A -0.3048
103 S A -0.9527
104 D A -1.5965
105 R A -0.9747
106 W A -0.5669
107 G A 0.0000
108 Q A -1.3963
109 G A -0.9512
110 T A -1.0720
111 Q A -1.0098
112 V A 0.0000
113 T A -0.5247
114 V A 0.0000
115 S A -1.0363
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Laboratory of Theory of Biopolymers 2018