| Chain sequence(s) |
A: IVIVKGH
C: IVIVKGH B: IVIVKGH E: IVIVKGH D: IVIVKGH G: IVIVKGH F: IVIVKGH H: IVIVKGH input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:55)
[INFO] Main: Simulation completed successfully. (00:00:58)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | I | A | 4.4262 | |
| 2 | V | A | 4.1906 | |
| 3 | I | A | 3.3002 | |
| 4 | V | A | 0.9340 | |
| 5 | K | A | -1.9979 | |
| 6 | G | A | -2.3780 | |
| 7 | H | A | -2.2211 | |
| 1 | I | B | 4.4719 | |
| 2 | V | B | 4.2192 | |
| 3 | I | B | 3.6594 | |
| 4 | V | B | 1.1118 | |
| 5 | K | B | -1.6284 | |
| 6 | G | B | -2.2474 | |
| 7 | H | B | -2.3561 | |
| 1 | I | C | 4.3896 | |
| 2 | V | C | 4.3948 | |
| 3 | I | C | 3.5630 | |
| 4 | V | C | 1.0906 | |
| 5 | K | C | -1.5711 | |
| 6 | G | C | -2.2272 | |
| 7 | H | C | -2.1147 | |
| 1 | I | D | 4.4853 | |
| 2 | V | D | 4.4756 | |
| 3 | I | D | 3.6079 | |
| 4 | V | D | 0.9632 | |
| 5 | K | D | -1.6726 | |
| 6 | G | D | -2.3230 | |
| 7 | H | D | -2.2518 | |
| 1 | I | E | 4.4315 | |
| 2 | V | E | 0.0000 | |
| 3 | I | E | 3.4340 | |
| 4 | V | E | 0.8320 | |
| 5 | K | E | -1.8245 | |
| 6 | G | E | -2.4509 | |
| 7 | H | E | -2.2667 | |
| 1 | I | F | 4.3218 | |
| 2 | V | F | 4.2896 | |
| 3 | I | F | 3.6552 | |
| 4 | V | F | 0.9840 | |
| 5 | K | F | -1.6290 | |
| 6 | G | F | -2.2796 | |
| 7 | H | F | -2.1643 | |
| 1 | I | G | 4.4463 | |
| 2 | V | G | 4.3831 | |
| 3 | I | G | 3.6152 | |
| 4 | V | G | 1.0297 | |
| 5 | K | G | -1.8543 | |
| 6 | G | G | -2.4010 | |
| 7 | H | G | -2.2855 | |
| 1 | I | H | 4.1337 | |
| 2 | V | H | 0.0000 | |
| 3 | I | H | 3.6090 | |
| 4 | V | H | 0.9062 | |
| 5 | K | H | -1.8225 | |
| 6 | G | H | -2.4726 | |
| 7 | H | H | -2.2811 |