Project name: DP43

Status: done

Started: 2026-04-22 06:34:30
Settings
Chain sequence(s) A: AANPYQRGPAPTAASVAAVTGPFATASVSVPRGNGFGGGVIYYPTDTSQGTFGGLAISPGLNGTWPGIAWLGSRLASQGFIVFGIETNNLNDSPTSRGTQLLAALDYLAQRSSVRSRLDPGRLAVAGHSMGGGGALDAALRRPSLKAAIGNAPYLPSNTLAGNRVPTLIYAMQNDTLVPPSRLTSLYNTIPATTERAYLEITGAGHNYIGQPSTTLARTMIPWLKIFIDNDTRFSQFLCPLADQSGIRQYRSSCPLVPATTRALTAAAG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:08)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:08)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:08)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:08)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:08)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:17)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:19)
Show buried residues

Minimal score value
-2.8324
Maximal score value
1.6677
Average score
-0.385
Total score value
-103.5706

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -0.0224
2 A A -0.1545
3 N A -0.4576
4 P A -0.4864
5 Y A -0.3081
6 Q A -0.7902
7 R A 0.0000
8 G A -0.4663
9 P A -0.4689
10 A A -0.2883
11 P A -0.3443
12 T A -0.2622
13 A A -0.2724
14 A A 0.1878
15 S A 0.0880
16 V A 0.0000
17 A A 0.3415
18 A A 0.7717
19 V A 1.6677
20 T A 0.6881
21 G A 0.1453
22 P A -0.3542
23 F A 0.0000
24 A A -0.1729
25 T A -0.1285
26 A A 0.1087
27 S A 0.2095
28 V A 0.4470
29 S A -0.0905
30 V A 0.0000
31 P A -1.3837
32 R A -2.5758
33 G A -1.9707
34 N A -2.2089
35 G A -1.5632
36 F A 0.0000
37 G A -1.7113
38 G A 0.0000
39 G A -0.4197
40 V A 0.3201
41 I A 0.0000
42 Y A 0.3022
43 Y A 0.1061
44 P A 0.0000
45 T A -0.4327
46 D A -1.0320
47 T A -0.9315
48 S A -0.8692
49 Q A -1.1391
50 G A -0.9570
51 T A -0.8518
52 F A 0.0000
53 G A 0.0000
54 G A 0.0000
55 L A 0.0000
56 A A 0.0000
57 I A 0.0000
58 S A 0.0000
59 P A 0.0000
60 G A 0.0000
61 L A -0.0825
62 N A -1.1218
63 G A -0.7901
64 T A -0.5517
65 W A 0.0000
66 P A -0.5126
67 G A -1.0047
68 I A 0.0000
69 A A -0.3574
70 W A -0.1499
71 L A 0.0000
72 G A 0.0000
73 S A 0.1780
74 R A 0.0000
75 L A 0.0000
76 A A 0.0000
77 S A 0.0000
78 Q A 0.0000
79 G A 0.0000
80 F A 0.0000
81 I A 0.0000
82 V A 0.0000
83 F A 0.0000
84 G A 0.0000
85 I A 0.0000
86 E A -0.9082
87 T A 0.0000
88 N A -1.5761
89 N A -1.6665
90 L A -0.8588
91 N A -1.4439
92 D A 0.0000
93 S A -0.3195
94 P A 0.0000
95 T A -0.2005
96 S A -0.5380
97 R A 0.0000
98 G A 0.0000
99 T A -0.3959
100 Q A 0.0000
101 L A 0.0000
102 L A 0.0000
103 A A -0.6056
104 A A 0.0000
105 L A 0.0000
106 D A -1.5388
107 Y A -1.6862
108 L A 0.0000
109 A A -1.9806
110 Q A -2.5867
111 R A -2.8324
112 S A 0.0000
113 S A -1.1899
114 V A 0.0000
115 R A -2.6357
116 S A -1.6354
117 R A -1.2936
118 L A 0.0000
119 D A -0.8902
120 P A -1.1477
121 G A -0.7404
122 R A 0.0000
123 L A 0.0000
124 A A 0.0000
125 V A 0.0000
126 A A 0.0000
127 G A 0.0000
128 H A 0.0000
129 S A 0.0000
130 M A 0.1656
131 G A 0.0000
132 G A 0.0000
133 G A 0.0000
134 G A 0.0000
135 A A 0.0000
136 L A 0.0000
137 D A -0.5457
138 A A 0.0000
139 A A 0.0000
140 L A -0.9726
141 R A -1.8622
142 R A -1.4817
143 P A -1.3692
144 S A -1.0129
145 L A 0.0000
146 K A -0.8720
147 A A 0.0000
148 A A 0.0000
149 I A 0.0000
150 G A 0.0000
151 N A 0.0000
152 A A 0.0000
153 P A 0.0000
154 Y A 0.5138
155 L A 0.0000
156 P A -0.3171
157 S A -0.4262
158 N A -0.4999
159 T A -0.5333
160 L A 0.0000
161 A A -0.5589
162 G A -1.0148
163 N A 0.0000
164 R A -2.2741
165 V A 0.0000
166 P A 0.0000
167 T A 0.0000
168 L A 0.0000
169 I A 0.0000
170 Y A 0.0000
171 A A 0.0000
172 M A 0.0000
173 Q A -1.6567
174 N A -1.5498
175 D A 0.0000
176 T A 0.1916
177 L A 1.1305
178 V A 0.0000
179 P A -0.2785
180 P A -0.5311
181 S A -0.6143
182 R A -0.5823
183 L A 0.0000
184 T A -0.8034
185 S A -0.8954
186 L A 0.0000
187 Y A 0.0000
188 N A -1.3719
189 T A -0.7765
190 I A 0.0000
191 P A -0.7762
192 A A -0.4495
193 T A -0.5206
194 T A 0.0000
195 E A -0.5637
196 R A -0.8709
197 A A 0.0000
198 Y A 0.0000
199 L A 0.0000
200 E A 0.0000
201 I A 0.0000
202 T A -1.3828
203 G A -1.2882
204 A A 0.0000
205 G A -1.1019
206 H A -0.8227
207 N A -1.4866
208 Y A -1.1482
209 I A 0.0000
210 G A -1.5270
211 Q A -1.6961
212 P A -0.6187
213 S A 0.0000
214 T A -0.0029
215 T A -0.4731
216 L A 0.0000
217 A A 0.0000
218 R A -0.1591
219 T A 0.0000
220 M A 0.0000
221 I A 0.0000
222 P A 0.0000
223 W A 0.0000
224 L A 0.0000
225 K A 0.0000
226 I A 0.0000
227 F A 0.0000
228 I A 0.0000
229 D A 0.0000
230 N A -0.3356
231 D A 0.0000
232 T A -0.5841
233 R A -0.8928
234 F A 0.0000
235 S A -0.7195
236 Q A -1.3377
237 F A 0.0000
238 L A 0.0000
239 C A -0.3406
240 P A -0.6405
241 L A -0.6689
242 A A -0.9195
243 D A -1.5836
244 Q A -2.0288
245 S A -1.3680
246 G A -1.2620
247 I A -1.5084
248 R A -2.1782
249 Q A -1.4808
250 Y A -0.8717
251 R A -0.9839
252 S A -0.5636
253 S A -0.2759
254 C A -0.0411
255 P A -0.1600
256 L A 0.0000
257 V A 0.1568
258 P A 0.0000
259 A A 0.0109
260 T A 0.1890
261 T A 0.3011
262 R A 0.0279
263 A A 0.5287
264 L A 1.3223
265 T A 0.4354
266 A A 0.2572
267 A A 0.4122
268 A A 0.2089
269 G A -0.1947
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Laboratory of Theory of Biopolymers 2018