Project name: MEDI1912_full

Status: done

Started: 2026-04-08 19:43:22
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGSSVKVSCKASGGTFWFGAISWVRQAPGQGLEWMGGIIPIFGLTNLAQSFQGRVTITADESTSTVYMELSSLRSEDTAVYYCARSSRIYDLNPSLTAYYDMDVWGQGTMVTVSS
L: QSVLTQPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLSAWVFGGGTKLTVL
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:00)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:02)
Show buried residues

Minimal score value
-3.1477
Maximal score value
2.7548
Average score
-0.4806
Total score value
-114.394

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
0 Q H -1.4888
1 V H -1.1272
2 Q H -1.3233
3 L H 0.0000
4 V H 0.6054
5 Q H 0.0000
6 S H -0.5417
7 G H -0.3750
8 A H 0.0624
9 E H -0.1038
10 V H 0.8646
11 K H -1.0627
12 K H -2.2757
13 P H -2.2459
14 G H -1.6854
15 S H -1.3392
16 S H -1.2666
17 V H 0.0000
18 K H -2.0972
19 V H 0.0000
20 S H -0.6174
21 C H 0.0000
22 K H -1.3682
23 A H -0.9852
24 S H -1.0352
25 G H -1.2025
26 G H -0.7315
27 T H 0.1635
28 F H 0.0000
29 W H 1.6306
30 F H 2.3538
31 G H 0.6755
32 A H 0.0000
33 I H 0.0000
34 S H 0.0000
35 W H 0.0000
36 V H 0.0000
37 R H -0.5776
38 Q H -0.8086
39 A H -1.0631
40 P H -0.8605
41 G H -1.2426
42 Q H -1.8418
43 G H -1.4022
44 L H 0.0000
45 E H -1.1888
46 W H 0.0000
47 M H 0.0000
48 G H 0.0000
49 G H 0.0000
50 I H 0.0000
51 I H 1.7432
52 P H 0.0000
53 I H 2.0431
54 F H 2.7548
55 G H 1.2813
56 L H 1.9974
57 T H 0.7311
58 N H -0.2205
59 L H -0.7347
60 A H 0.0000
61 Q H -1.6040
62 S H -1.2232
63 F H 0.0000
64 Q H -2.0075
65 G H -1.4137
66 R H -1.1750
67 V H 0.0000
68 T H -0.8558
69 I H 0.0000
70 T H -0.1016
71 A H -0.6272
72 D H -1.3519
73 E H -1.1491
74 S H -0.8845
75 T H -0.9417
76 S H -1.1212
77 T H 0.0000
78 V H 0.0000
79 Y H -0.6177
80 M H 0.0000
81 E H -1.5771
82 L H 0.0000
83 S H -1.1884
84 S H -1.2219
85 L H 0.0000
86 R H -3.1477
87 S H -2.4613
88 E H -2.5749
89 D H 0.0000
90 T H -0.8516
91 A H 0.0000
92 V H 0.2874
93 Y H 0.0000
94 Y H 0.0000
95 C H 0.0000
96 A H 0.0000
97 R H -0.8519
98 S H 0.0000
99 S H -0.4747
100 R H -0.8746
101 I H 0.4238
102 Y H -0.0565
103 D H -0.4969
104 L H 0.7548
105 N H -0.6295
106 P H -0.4011
107 S H 0.1498
108 L H 1.0243
109 T H 0.2925
110 A H 0.2132
111 Y H 0.1991
112 Y H -0.2861
113 D H -0.3219
114 M H 0.0000
115 D H -1.1041
116 V H -0.6641
117 W H -0.4451
118 G H 0.0000
119 Q H -0.8906
120 G H -0.2679
121 T H 0.0000
122 M H 0.5171
123 V H 0.0000
124 T H -0.2478
125 V H 0.0000
126 S H -1.2444
127 S H -0.8112
128 Q L -0.8817
129 S L -0.0221
130 V L 0.9583
131 L L 0.0000
132 T L 0.0245
133 Q L -0.3240
134 P L -0.6520
135 P L -0.9752
136 S L -1.0012
137 V L -0.3752
138 S L -0.2815
139 A L -0.4520
140 A L -0.4882
141 P L -1.1695
142 G L -1.9253
143 Q L -2.5481
144 K L -2.5579
145 V L 0.0000
146 T L -0.4755
147 I L 0.0000
148 S L -0.3859
149 C L 0.0000
150 S L -0.3202
151 G L -0.1624
152 S L -0.4445
153 S L -0.9046
154 S L -0.5936
155 N L 0.0000
156 I L 0.0000
157 G L -1.0812
158 N L -1.3452
159 N L -0.3732
160 Y L 0.5530
161 V L 0.0000
162 S L 0.0000
163 W L 0.0000
164 Y L 0.0000
165 Q L -0.8129
166 Q L -0.8582
167 L L -0.1945
168 P L -0.4019
169 G L -0.4313
170 T L -0.5645
171 A L -0.5842
172 P L 0.0000
173 K L -1.4332
174 L L 0.0000
175 L L 0.0000
176 I L 0.0000
177 Y L -0.8477
178 D L -0.8441
179 N L -1.1858
180 N L -2.2425
181 K L -2.4098
182 R L -2.2619
183 P L -1.0661
184 S L -0.7890
185 G L -0.8859
186 I L -1.0465
187 P L -1.3706
188 D L -2.2123
189 R L -1.4638
190 F L 0.0000
191 S L -1.4159
192 G L -1.2840
193 S L -1.2334
194 K L -1.1037
195 S L -0.8652
196 G L -1.0576
197 T L -0.9175
198 S L -0.7167
199 A L 0.0000
200 T L -0.6118
201 L L 0.0000
202 G L 0.0000
203 I L 0.0000
204 T L -1.8379
205 G L -1.6938
206 L L 0.0000
207 Q L -1.7660
208 T L -0.9830
209 G L -1.0629
210 D L 0.0000
211 E L -1.5406
212 A L 0.0000
213 D L -1.6000
214 Y L 0.0000
215 Y L 0.0000
216 C L 0.0000
217 G L 0.0000
218 T L 0.0000
219 W L 0.0000
220 D L 0.0000
221 S L -0.1069
222 S L 0.1620
223 L L 0.6957
224 S L 0.2503
225 A L -0.0031
226 W L 0.0000
227 V L 0.0000
228 F L 0.0000
229 G L 0.0000
230 G L -0.7673
231 G L -1.2219
232 T L 0.0000
233 K L -2.2881
234 L L 0.0000
235 T L -0.4153
236 V L 0.0235
237 L L 1.2878
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Laboratory of Theory of Biopolymers 2018