| Chain sequence(s) |
H: QVQLVQSGAEVKKPGSSVKVSCKASGGTFWFGAISWVRQAPGQGLEWMGGIIPIFGLTNLAQSFQGRVTITADESTSTVYMELSSLRSEDTAVYYCARSSRIYDLNPSLTAYYDMDVWGQGTMVTVSS
L: QSVLTQPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLSAWVFGGGTKLTVL input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:00)
[INFO] Main: Simulation completed successfully. (00:00:02)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 0 | Q | H | -1.4888 | |
| 1 | V | H | -1.1272 | |
| 2 | Q | H | -1.3233 | |
| 3 | L | H | 0.0000 | |
| 4 | V | H | 0.6054 | |
| 5 | Q | H | 0.0000 | |
| 6 | S | H | -0.5417 | |
| 7 | G | H | -0.3750 | |
| 8 | A | H | 0.0624 | |
| 9 | E | H | -0.1038 | |
| 10 | V | H | 0.8646 | |
| 11 | K | H | -1.0627 | |
| 12 | K | H | -2.2757 | |
| 13 | P | H | -2.2459 | |
| 14 | G | H | -1.6854 | |
| 15 | S | H | -1.3392 | |
| 16 | S | H | -1.2666 | |
| 17 | V | H | 0.0000 | |
| 18 | K | H | -2.0972 | |
| 19 | V | H | 0.0000 | |
| 20 | S | H | -0.6174 | |
| 21 | C | H | 0.0000 | |
| 22 | K | H | -1.3682 | |
| 23 | A | H | -0.9852 | |
| 24 | S | H | -1.0352 | |
| 25 | G | H | -1.2025 | |
| 26 | G | H | -0.7315 | |
| 27 | T | H | 0.1635 | |
| 28 | F | H | 0.0000 | |
| 29 | W | H | 1.6306 | |
| 30 | F | H | 2.3538 | |
| 31 | G | H | 0.6755 | |
| 32 | A | H | 0.0000 | |
| 33 | I | H | 0.0000 | |
| 34 | S | H | 0.0000 | |
| 35 | W | H | 0.0000 | |
| 36 | V | H | 0.0000 | |
| 37 | R | H | -0.5776 | |
| 38 | Q | H | -0.8086 | |
| 39 | A | H | -1.0631 | |
| 40 | P | H | -0.8605 | |
| 41 | G | H | -1.2426 | |
| 42 | Q | H | -1.8418 | |
| 43 | G | H | -1.4022 | |
| 44 | L | H | 0.0000 | |
| 45 | E | H | -1.1888 | |
| 46 | W | H | 0.0000 | |
| 47 | M | H | 0.0000 | |
| 48 | G | H | 0.0000 | |
| 49 | G | H | 0.0000 | |
| 50 | I | H | 0.0000 | |
| 51 | I | H | 1.7432 | |
| 52 | P | H | 0.0000 | |
| 53 | I | H | 2.0431 | |
| 54 | F | H | 2.7548 | |
| 55 | G | H | 1.2813 | |
| 56 | L | H | 1.9974 | |
| 57 | T | H | 0.7311 | |
| 58 | N | H | -0.2205 | |
| 59 | L | H | -0.7347 | |
| 60 | A | H | 0.0000 | |
| 61 | Q | H | -1.6040 | |
| 62 | S | H | -1.2232 | |
| 63 | F | H | 0.0000 | |
| 64 | Q | H | -2.0075 | |
| 65 | G | H | -1.4137 | |
| 66 | R | H | -1.1750 | |
| 67 | V | H | 0.0000 | |
| 68 | T | H | -0.8558 | |
| 69 | I | H | 0.0000 | |
| 70 | T | H | -0.1016 | |
| 71 | A | H | -0.6272 | |
| 72 | D | H | -1.3519 | |
| 73 | E | H | -1.1491 | |
| 74 | S | H | -0.8845 | |
| 75 | T | H | -0.9417 | |
| 76 | S | H | -1.1212 | |
| 77 | T | H | 0.0000 | |
| 78 | V | H | 0.0000 | |
| 79 | Y | H | -0.6177 | |
| 80 | M | H | 0.0000 | |
| 81 | E | H | -1.5771 | |
| 82 | L | H | 0.0000 | |
| 83 | S | H | -1.1884 | |
| 84 | S | H | -1.2219 | |
| 85 | L | H | 0.0000 | |
| 86 | R | H | -3.1477 | |
| 87 | S | H | -2.4613 | |
| 88 | E | H | -2.5749 | |
| 89 | D | H | 0.0000 | |
| 90 | T | H | -0.8516 | |
| 91 | A | H | 0.0000 | |
| 92 | V | H | 0.2874 | |
| 93 | Y | H | 0.0000 | |
| 94 | Y | H | 0.0000 | |
| 95 | C | H | 0.0000 | |
| 96 | A | H | 0.0000 | |
| 97 | R | H | -0.8519 | |
| 98 | S | H | 0.0000 | |
| 99 | S | H | -0.4747 | |
| 100 | R | H | -0.8746 | |
| 101 | I | H | 0.4238 | |
| 102 | Y | H | -0.0565 | |
| 103 | D | H | -0.4969 | |
| 104 | L | H | 0.7548 | |
| 105 | N | H | -0.6295 | |
| 106 | P | H | -0.4011 | |
| 107 | S | H | 0.1498 | |
| 108 | L | H | 1.0243 | |
| 109 | T | H | 0.2925 | |
| 110 | A | H | 0.2132 | |
| 111 | Y | H | 0.1991 | |
| 112 | Y | H | -0.2861 | |
| 113 | D | H | -0.3219 | |
| 114 | M | H | 0.0000 | |
| 115 | D | H | -1.1041 | |
| 116 | V | H | -0.6641 | |
| 117 | W | H | -0.4451 | |
| 118 | G | H | 0.0000 | |
| 119 | Q | H | -0.8906 | |
| 120 | G | H | -0.2679 | |
| 121 | T | H | 0.0000 | |
| 122 | M | H | 0.5171 | |
| 123 | V | H | 0.0000 | |
| 124 | T | H | -0.2478 | |
| 125 | V | H | 0.0000 | |
| 126 | S | H | -1.2444 | |
| 127 | S | H | -0.8112 | |
| 128 | Q | L | -0.8817 | |
| 129 | S | L | -0.0221 | |
| 130 | V | L | 0.9583 | |
| 131 | L | L | 0.0000 | |
| 132 | T | L | 0.0245 | |
| 133 | Q | L | -0.3240 | |
| 134 | P | L | -0.6520 | |
| 135 | P | L | -0.9752 | |
| 136 | S | L | -1.0012 | |
| 137 | V | L | -0.3752 | |
| 138 | S | L | -0.2815 | |
| 139 | A | L | -0.4520 | |
| 140 | A | L | -0.4882 | |
| 141 | P | L | -1.1695 | |
| 142 | G | L | -1.9253 | |
| 143 | Q | L | -2.5481 | |
| 144 | K | L | -2.5579 | |
| 145 | V | L | 0.0000 | |
| 146 | T | L | -0.4755 | |
| 147 | I | L | 0.0000 | |
| 148 | S | L | -0.3859 | |
| 149 | C | L | 0.0000 | |
| 150 | S | L | -0.3202 | |
| 151 | G | L | -0.1624 | |
| 152 | S | L | -0.4445 | |
| 153 | S | L | -0.9046 | |
| 154 | S | L | -0.5936 | |
| 155 | N | L | 0.0000 | |
| 156 | I | L | 0.0000 | |
| 157 | G | L | -1.0812 | |
| 158 | N | L | -1.3452 | |
| 159 | N | L | -0.3732 | |
| 160 | Y | L | 0.5530 | |
| 161 | V | L | 0.0000 | |
| 162 | S | L | 0.0000 | |
| 163 | W | L | 0.0000 | |
| 164 | Y | L | 0.0000 | |
| 165 | Q | L | -0.8129 | |
| 166 | Q | L | -0.8582 | |
| 167 | L | L | -0.1945 | |
| 168 | P | L | -0.4019 | |
| 169 | G | L | -0.4313 | |
| 170 | T | L | -0.5645 | |
| 171 | A | L | -0.5842 | |
| 172 | P | L | 0.0000 | |
| 173 | K | L | -1.4332 | |
| 174 | L | L | 0.0000 | |
| 175 | L | L | 0.0000 | |
| 176 | I | L | 0.0000 | |
| 177 | Y | L | -0.8477 | |
| 178 | D | L | -0.8441 | |
| 179 | N | L | -1.1858 | |
| 180 | N | L | -2.2425 | |
| 181 | K | L | -2.4098 | |
| 182 | R | L | -2.2619 | |
| 183 | P | L | -1.0661 | |
| 184 | S | L | -0.7890 | |
| 185 | G | L | -0.8859 | |
| 186 | I | L | -1.0465 | |
| 187 | P | L | -1.3706 | |
| 188 | D | L | -2.2123 | |
| 189 | R | L | -1.4638 | |
| 190 | F | L | 0.0000 | |
| 191 | S | L | -1.4159 | |
| 192 | G | L | -1.2840 | |
| 193 | S | L | -1.2334 | |
| 194 | K | L | -1.1037 | |
| 195 | S | L | -0.8652 | |
| 196 | G | L | -1.0576 | |
| 197 | T | L | -0.9175 | |
| 198 | S | L | -0.7167 | |
| 199 | A | L | 0.0000 | |
| 200 | T | L | -0.6118 | |
| 201 | L | L | 0.0000 | |
| 202 | G | L | 0.0000 | |
| 203 | I | L | 0.0000 | |
| 204 | T | L | -1.8379 | |
| 205 | G | L | -1.6938 | |
| 206 | L | L | 0.0000 | |
| 207 | Q | L | -1.7660 | |
| 208 | T | L | -0.9830 | |
| 209 | G | L | -1.0629 | |
| 210 | D | L | 0.0000 | |
| 211 | E | L | -1.5406 | |
| 212 | A | L | 0.0000 | |
| 213 | D | L | -1.6000 | |
| 214 | Y | L | 0.0000 | |
| 215 | Y | L | 0.0000 | |
| 216 | C | L | 0.0000 | |
| 217 | G | L | 0.0000 | |
| 218 | T | L | 0.0000 | |
| 219 | W | L | 0.0000 | |
| 220 | D | L | 0.0000 | |
| 221 | S | L | -0.1069 | |
| 222 | S | L | 0.1620 | |
| 223 | L | L | 0.6957 | |
| 224 | S | L | 0.2503 | |
| 225 | A | L | -0.0031 | |
| 226 | W | L | 0.0000 | |
| 227 | V | L | 0.0000 | |
| 228 | F | L | 0.0000 | |
| 229 | G | L | 0.0000 | |
| 230 | G | L | -0.7673 | |
| 231 | G | L | -1.2219 | |
| 232 | T | L | 0.0000 | |
| 233 | K | L | -2.2881 | |
| 234 | L | L | 0.0000 | |
| 235 | T | L | -0.4153 | |
| 236 | V | L | 0.0235 | |
| 237 | L | L | 1.2878 |