Project name: query_structure

Status: done

Started: 2026-03-16 21:45:05
Settings
Chain sequence(s) A: MLPAPKNLVVSRVTEDSARLSWTAPDAAFDSFNIAYWEPGIGGEAIWLRVPGSERSYDLTGLKPGTEYKVWIHGVKGGASSPPLIAAFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:38)
Show buried residues

Minimal score value
-3.1278
Maximal score value
2.2651
Average score
-0.6162
Total score value
-55.4541

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.0593
2 L A 0.4319
3 P A -0.2239
4 A A -0.5410
5 P A 0.0000
6 K A -2.0604
7 N A -1.1847
8 L A 0.3547
9 V A 1.2305
10 V A 0.3862
11 S A -0.5922
12 R A -2.0074
13 V A -1.0742
14 T A -1.8330
15 E A -3.1203
16 D A -2.8553
17 S A -2.1118
18 A A 0.0000
19 R A -1.1390
20 L A 0.0000
21 S A -0.3288
22 W A 0.0000
23 T A -1.2951
24 A A -1.4237
25 P A -1.4074
26 D A -2.2743
27 A A -1.4193
28 A A 0.0000
29 F A 0.0000
30 D A -2.4403
31 S A 0.0000
32 F A 0.0000
33 N A -0.6030
34 I A 0.0000
35 A A 0.0000
36 Y A 0.6647
37 W A -0.2355
38 E A -0.9084
39 P A -0.6622
40 G A 0.0317
41 I A 1.0501
42 G A -0.1721
43 G A -0.5022
44 E A -1.3157
45 A A -0.1630
46 I A 1.1044
47 W A 1.1554
48 L A 0.2013
49 R A -1.5741
50 V A 0.0000
51 P A -1.5532
52 G A 0.0000
53 S A -1.6184
54 E A -1.5511
55 R A -1.1571
56 S A -0.6086
57 Y A -0.6700
58 D A -1.5146
59 L A 0.0000
60 T A -1.3384
61 G A -1.5344
62 L A 0.0000
63 K A -3.1278
64 P A -2.6349
65 G A -1.9848
66 T A -2.1590
67 E A -2.1307
68 Y A 0.0000
69 K A -0.4000
70 V A 0.0000
71 W A 1.4608
72 I A 0.0000
73 H A -0.2671
74 G A 0.0000
75 V A -1.2364
76 K A -1.6680
77 G A -1.3843
78 G A -1.1126
79 A A -0.5920
80 S A -0.5063
81 S A 0.0000
82 P A 0.2539
83 P A 0.3068
84 L A 0.8369
85 I A 2.2651
86 A A 1.3024
87 A A 0.2076
88 F A 0.0000
89 T A -1.4765
90 T A -2.0633
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Laboratory of Theory of Biopolymers 2018