| Chain sequence(s) |
A: NGLPVCGETCVGGTCNTPGCTCSWPVCTR
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:09)
[INFO] Main: Simulation completed successfully. (00:00:10)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | N | A | -1.8952 | |
| 2 | G | A | -0.8085 | |
| 3 | L | A | 0.5627 | |
| 4 | P | A | 0.4945 | |
| 5 | V | A | 0.7895 | |
| 6 | C | A | -0.2768 | |
| 7 | G | A | -0.5750 | |
| 8 | E | A | -0.8023 | |
| 9 | T | A | 0.2104 | |
| 10 | C | A | 0.0000 | |
| 11 | V | A | 1.7146 | |
| 12 | G | A | 0.1872 | |
| 13 | G | A | 0.0154 | |
| 14 | T | A | -0.3089 | |
| 15 | C | A | -0.4624 | |
| 16 | N | A | -1.6182 | |
| 17 | T | A | -1.2843 | |
| 18 | P | A | -1.0542 | |
| 19 | G | A | -1.2671 | |
| 20 | C | A | -1.1706 | |
| 21 | T | A | -0.7505 | |
| 22 | C | A | 0.0146 | |
| 23 | S | A | 0.5869 | |
| 24 | W | A | 1.6929 | |
| 25 | P | A | 1.2531 | |
| 26 | V | A | 1.5004 | |
| 27 | C | A | 0.0000 | |
| 28 | T | A | 0.0000 | |
| 29 | R | A | -1.9817 |