Project name: query_structure

Status: done

Started: 2026-03-16 23:07:47
Settings
Chain sequence(s) A: PQCVKKDELCIPYYLDCCEPLECKKVNWWDHKCIG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:42)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:43)
Show buried residues

Minimal score value
-3.5583
Maximal score value
2.2655
Average score
-0.8597
Total score value
-30.0893

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 P A -0.6216
2 Q A -1.1731
3 C A -0.8839
4 V A -1.7186
5 K A -3.3405
6 K A -3.5583
7 D A -3.0551
8 E A -2.2268
9 L A -0.1847
10 C A 0.0000
11 I A 1.5426
12 P A 0.7306
13 Y A 2.0504
14 Y A 2.2655
15 L A 1.1988
16 D A -1.3327
17 C A 0.0000
18 C A -1.4695
19 E A -2.3996
20 P A -1.7763
21 L A -2.1383
22 E A -2.1674
23 C A 0.0000
24 K A -1.3133
25 K A -1.3409
26 V A -1.1989
27 N A -0.9730
28 W A 0.5932
29 W A 0.4991
30 D A -0.8944
31 H A -0.9668
32 K A -1.7240
33 C A 0.0000
34 I A -1.4909
35 G A -1.0209
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018