| Chain sequence(s) |
A: GKGHKGH
B: GKGHKGH input PDB |
| Selected Chain(s) | A,B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:27)
[INFO] Main: Simulation completed successfully. (00:00:27)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -3.5088 | |
| 2 | K | A | -4.4173 | |
| 3 | G | A | -4.1358 | |
| 4 | H | A | -3.8604 | |
| 5 | K | A | -3.5841 | |
| 6 | G | A | -2.0312 | |
| 7 | H | A | -1.6827 | |
| 1 | G | B | -2.9700 | |
| 2 | K | B | -4.1314 | |
| 3 | G | B | -3.7056 | |
| 4 | H | B | -4.1971 | |
| 5 | K | B | -3.9458 | |
| 6 | G | B | -2.6148 | |
| 7 | H | B | -1.7761 |