Project name: RFC19

Status: done

Started: 2025-07-15 15:42:46
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Chain sequence(s) A: YTKTTTTVVEVTGGGVYAEIGLKITEVDGKVTIEKEPLTFVEPGQTLVKTDVDTFTGSVKLYTFSHSRTRVANTPEEKAQAKEELKALAEQAEKSAEKFEKKFKEDLA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:50)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:51)
Show buried residues

Minimal score value
-4.5601
Maximal score value
1.9847
Average score
-1.1941
Total score value
-128.9597

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Y A 0.8598
2 T A 0.1854
3 K A -0.8587
4 T A -0.4964
5 T A -0.4068
6 T A 0.3988
7 T A 1.0041
8 V A 1.9847
9 V A 0.4419
10 E A -1.3891
11 V A -1.1481
12 T A -0.8924
13 G A -0.6148
14 G A 0.0000
15 G A 0.0000
16 V A 0.0000
17 Y A 0.0000
18 A A 0.0000
19 E A -0.9234
20 I A 0.0000
21 G A 0.0000
22 L A 0.0000
23 K A -0.8775
24 I A 0.0000
25 T A -0.6430
26 E A -1.1097
27 V A -1.4298
28 D A -2.5693
29 G A -2.0770
30 K A -2.2216
31 V A -1.0301
32 T A -0.4585
33 I A -0.5116
34 E A -2.3244
35 K A -2.6690
36 E A -2.5650
37 P A -1.2421
38 L A -0.5840
39 T A -0.0830
40 F A -0.0334
41 V A 0.0000
42 E A -1.2787
43 P A -1.1974
44 G A -1.5237
45 Q A -1.5214
46 T A -0.5370
47 L A 0.7945
48 V A 1.9047
49 K A 0.6062
50 T A 0.0692
51 D A -0.8249
52 V A 0.6017
53 D A 0.1577
54 T A 0.3084
55 F A 0.4357
56 T A -0.0222
57 G A -0.5065
58 S A -0.7487
59 V A -0.5909
60 K A -1.1543
61 L A 0.0402
62 Y A 0.5465
63 T A 0.3356
64 F A 0.2111
65 S A -0.4319
66 H A -0.6772
67 S A -0.9321
68 R A -1.2947
69 T A -0.4369
70 R A -0.5357
71 V A 0.8400
72 A A 0.0000
73 N A -1.7623
74 T A -1.9234
75 P A -2.1799
76 E A -3.2982
77 E A -3.3833
78 K A -2.8562
79 A A -2.7064
80 Q A -3.6751
81 A A -2.6524
82 K A -2.9780
83 E A -3.6670
84 E A -3.3265
85 L A 0.0000
86 K A -2.8575
87 A A -2.3550
88 L A -2.0218
89 A A 0.0000
90 E A -3.3085
91 Q A -3.0222
92 A A -2.5311
93 E A -3.4893
94 K A -3.5823
95 S A -2.7550
96 A A 0.0000
97 E A -3.8317
98 K A -3.9261
99 F A -2.7553
100 E A -3.3336
101 K A -4.5601
102 K A -4.5248
103 F A 0.0000
104 K A -3.5780
105 E A -4.0624
106 D A -3.4403
107 L A -1.6988
108 A A -1.2705
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Laboratory of Theory of Biopolymers 2018