| Chain sequence(s) |
A: FGGHKFG
C: FGGHKFG B: FGGHKFG E: FGGHKFG D: FGGHKFG G: FGGHKFG F: FGGHKFG I: FGGHKFG H: FGGHKFG K: FGGHKFG J: FGGHKFG M: FGGHKFG L: FGGHKFG N: FGGHKFG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,N |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:36)
[INFO] Main: Simulation completed successfully. (00:04:39)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 2.8031 | |
| 2 | G | A | 1.3610 | |
| 3 | G | A | 0.0526 | |
| 4 | H | A | -0.7128 | |
| 5 | K | A | -1.2321 | |
| 6 | F | A | 0.7210 | |
| 7 | G | A | -0.0501 | |
| 1 | F | B | 2.6582 | |
| 2 | G | B | 1.0753 | |
| 3 | G | B | 0.0000 | |
| 4 | H | B | -0.8974 | |
| 5 | K | B | -1.8114 | |
| 6 | F | B | -0.0212 | |
| 7 | G | B | -0.6333 | |
| 1 | F | C | 2.4440 | |
| 2 | G | C | 0.5101 | |
| 3 | G | C | -0.6669 | |
| 4 | H | C | -1.4105 | |
| 5 | K | C | -1.8953 | |
| 6 | F | C | -0.3664 | |
| 7 | G | C | -0.5354 | |
| 1 | F | D | 1.9505 | |
| 2 | G | D | 0.1679 | |
| 3 | G | D | -0.6766 | |
| 4 | H | D | -1.2936 | |
| 5 | K | D | -1.1497 | |
| 6 | F | D | 0.7823 | |
| 7 | G | D | 0.1053 | |
| 1 | F | E | 1.9076 | |
| 2 | G | E | 0.1762 | |
| 3 | G | E | -1.0711 | |
| 4 | H | E | -1.7203 | |
| 5 | K | E | -1.8074 | |
| 6 | F | E | 0.5790 | |
| 7 | G | E | -0.3272 | |
| 1 | F | F | 2.0329 | |
| 2 | G | F | -0.0525 | |
| 3 | G | F | -1.0581 | |
| 4 | H | F | -1.8482 | |
| 5 | K | F | -1.8478 | |
| 6 | F | F | 0.5498 | |
| 7 | G | F | 0.0464 | |
| 1 | F | G | 2.0298 | |
| 2 | G | G | 0.4676 | |
| 3 | G | G | -0.7728 | |
| 4 | H | G | -1.5934 | |
| 5 | K | G | -1.6978 | |
| 6 | F | G | 0.6411 | |
| 7 | G | G | 0.2052 | |
| 1 | F | H | 2.0904 | |
| 2 | G | H | 0.4880 | |
| 3 | G | H | -0.6846 | |
| 4 | H | H | -1.4030 | |
| 5 | K | H | -1.7584 | |
| 6 | F | H | -0.0916 | |
| 7 | G | H | -0.4031 | |
| 1 | F | I | 2.1284 | |
| 2 | G | I | 0.6664 | |
| 3 | G | I | -0.4282 | |
| 4 | H | I | -1.0576 | |
| 5 | K | I | -1.4084 | |
| 6 | F | I | 0.1296 | |
| 7 | G | I | -0.1947 | |
| 1 | F | J | 1.5594 | |
| 2 | G | J | 0.4431 | |
| 3 | G | J | -0.4133 | |
| 4 | H | J | -0.9688 | |
| 5 | K | J | -1.3009 | |
| 6 | F | J | 0.6319 | |
| 7 | G | J | 0.1394 | |
| 1 | F | K | 1.9438 | |
| 2 | G | K | 0.2734 | |
| 3 | G | K | -0.4638 | |
| 4 | H | K | -1.3867 | |
| 5 | K | K | -1.2637 | |
| 6 | F | K | 0.7907 | |
| 7 | G | K | 0.1647 | |
| 1 | F | L | 1.9380 | |
| 2 | G | L | 0.1410 | |
| 3 | G | L | -0.5419 | |
| 4 | H | L | -0.9752 | |
| 5 | K | L | -1.2019 | |
| 6 | F | L | 0.5852 | |
| 7 | G | L | -0.0647 | |
| 1 | F | M | 2.3353 | |
| 2 | G | M | 0.3667 | |
| 3 | G | M | -0.7648 | |
| 4 | H | M | -1.4139 | |
| 5 | K | M | -1.3354 | |
| 6 | F | M | 0.6976 | |
| 7 | G | M | -0.1997 | |
| 1 | F | N | 2.6858 | |
| 2 | G | N | 0.0677 | |
| 3 | G | N | -0.8207 | |
| 4 | H | N | -1.4617 | |
| 5 | K | N | -1.6688 | |
| 6 | F | N | 0.3629 | |
| 7 | G | N | -0.4064 |